Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030854.1-P | Field mustard | nucleus | 94.57 | 94.87 |
| CDY10554 | Canola | cytosol | 84.98 | 87.21 |
| CDY08249 | Canola | cytosol | 62.3 | 58.21 |
| CDY26096 | Canola | nucleus | 53.04 | 56.46 |
| AT1G55530.2 | Thale cress | nucleus | 59.74 | 53.28 |
| CDY50031 | Canola | cytosol | 44.41 | 47.93 |
| CDY56080 | Canola | cytosol | 42.81 | 47.18 |
| CDY43991 | Canola | nucleus | 45.69 | 46.28 |
| CDY46577 | Canola | nucleus | 42.49 | 45.7 |
| CDY56081 | Canola | nucleus | 33.55 | 43.93 |
| CDY28208 | Canola | cytosol | 31.63 | 42.67 |
| GSMUA_Achr11P... | Banana | nucleus | 36.74 | 42.59 |
| CDX92768 | Canola | nucleus | 39.94 | 40.45 |
| CDX92770 | Canola | nucleus | 40.26 | 38.89 |
| CDY32791 | Canola | nucleus | 43.45 | 38.64 |
| CDY42740 | Canola | nucleus | 39.62 | 38.51 |
| Os05t0488800-01 | Rice | nucleus | 37.06 | 35.91 |
| CDX89343 | Canola | cytosol, mitochondrion | 40.26 | 35.8 |
| Zm00001d010635_P001 | Maize | nucleus | 35.46 | 35.58 |
| TraesCS1D01G305300.1 | Wheat | nucleus | 37.06 | 34.94 |
| Os03t0812200-01 | Rice | nucleus | 40.89 | 34.69 |
| TraesCS1B01G316300.1 | Wheat | nucleus | 36.74 | 34.64 |
| Zm00001d013005_P002 | Maize | nucleus | 40.26 | 33.96 |
| Zm00001d038528_P001 | Maize | cytosol | 35.78 | 33.63 |
| KXG37275 | Sorghum | nucleus | 40.58 | 33.16 |
| CDX82271 | Canola | cytosol | 22.36 | 32.86 |
| CDX94342 | Canola | mitochondrion, nucleus | 40.26 | 32.56 |
| CDY36069 | Canola | cytosol | 21.73 | 31.34 |
| HORVU5Hr1G111530.1 | Barley | nucleus | 39.62 | 31.16 |
| TraesCS5B01G480100.1 | Wheat | nucleus | 39.3 | 30.6 |
| HORVU1Hr1G068950.2 | Barley | golgi | 37.38 | 30.31 |
| TraesCS5D01G480800.1 | Wheat | nucleus | 38.98 | 30.2 |
| CDY72364 | Canola | cytosol | 21.41 | 30.18 |
| TraesCS5A01G467700.1 | Wheat | nucleus | 38.66 | 29.95 |
| KXG22238 | Sorghum | plastid | 37.06 | 29.82 |
| CDY24592 | Canola | nucleus | 26.84 | 26.17 |
| CDY68603 | Canola | cytosol | 20.13 | 26.03 |
| CDY25360 | Canola | cytosol, nucleus, plastid | 26.84 | 26.01 |
| CDY33437 | Canola | cytosol | 26.52 | 25.62 |
| CDY22790 | Canola | nucleus | 22.04 | 25.56 |
| CDX75998 | Canola | nucleus | 15.34 | 25.0 |
| CDX94665 | Canola | nucleus | 18.53 | 24.68 |
| CDY32333 | Canola | cytosol | 18.53 | 24.68 |
| CDY23878 | Canola | mitochondrion, nucleus | 23.96 | 24.59 |
| CDY23599 | Canola | golgi, mitochondrion | 45.69 | 23.48 |
| CDY22483 | Canola | mitochondrion | 22.68 | 23.43 |
| CDY53450 | Canola | cytosol | 23.96 | 23.29 |
| CDX79968 | Canola | mitochondrion, nucleus | 22.04 | 23.23 |
| CDX81263 | Canola | cytosol, peroxisome, plastid | 21.41 | 23.1 |
| CDY27204 | Canola | mitochondrion, nucleus | 23.0 | 23.08 |
| CDY35437 | Canola | mitochondrion, nucleus | 23.32 | 23.03 |
| CDY42507 | Canola | cytosol | 24.6 | 22.71 |
| CDX80258 | Canola | plastid | 25.56 | 22.54 |
| CDY18690 | Canola | cytosol, peroxisome, plastid | 21.41 | 22.41 |
| CDY11934 | Canola | nucleus | 46.65 | 22.39 |
| CDX72127 | Canola | mitochondrion | 22.36 | 22.15 |
| CDX74533 | Canola | cytosol | 20.13 | 21.58 |
| CDY61251 | Canola | cytosol | 24.6 | 21.33 |
| CDX99105 | Canola | cytosol, plastid | 21.09 | 20.37 |
| CDY20473 | Canola | nucleus, plastid | 21.73 | 20.36 |
| CDY33046 | Canola | plastid | 22.04 | 20.18 |
| CDY07641 | Canola | nucleus | 23.96 | 20.05 |
| CDX88709 | Canola | cytosol, plastid | 25.24 | 20.05 |
| CDY01669 | Canola | plastid | 20.45 | 19.81 |
| CDX74839 | Canola | cytosol, plastid | 20.45 | 19.75 |
| CDY24951 | Canola | nucleus | 23.64 | 19.73 |
| CDY48679 | Canola | cytosol, plastid | 20.77 | 19.46 |
| CDX94901 | Canola | cytosol | 18.85 | 18.79 |
| CDX69496 | Canola | cytosol | 13.74 | 14.93 |
| CDY01221 | Canola | cytosol | 10.22 | 14.68 |
| CDX78323 | Canola | cytosol | 13.42 | 14.58 |
| CDY26465 | Canola | cytosol | 15.65 | 14.45 |
| CDY69134 | Canola | cytosol | 13.42 | 14.43 |
| CDY58938 | Canola | nucleus | 19.81 | 14.06 |
| CDY03622 | Canola | nucleus | 19.81 | 13.9 |
| CDY02194 | Canola | peroxisome | 16.93 | 13.32 |
| CDY21513 | Canola | cytosol | 15.02 | 13.2 |
| CDY51628 | Canola | peroxisome | 16.93 | 13.05 |
| CDX69973 | Canola | cytosol | 14.7 | 12.78 |
| CDY34721 | Canola | cytosol | 15.02 | 12.05 |
| CDY34722 | Canola | cytosol | 15.02 | 12.05 |
| CDX90972 | Canola | cytosol | 12.14 | 11.34 |
| CDX85531 | Canola | cytosol | 11.5 | 10.5 |
Protein Annotations
| EnsemblPlants:CDY56022 | EnsemblPlantsGene:GSBRNA2T00017685001 | Gene3D:3.30.40.10 | GO:A0A078IZN0 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44576 | PANTHER:PTHR44576:SF1 | PFAM:PF13639 | PFAM:PF14369 |
| PFscan:PS50089 | ProteinID:CDY56022 | ProteinID:CDY56022.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI0004EE2FF0 | UniProt:A0A078IZN0 | MapMan:35.1 | : | : | : |
Description
BnaA08g29290DBnaA08g29290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IZN0]
Coordinates
chrLK033448:+:39252..40894
Molecular Weight (calculated)
34372.0 Da
IEP (calculated)
3.846
GRAVY (calculated)
-0.649
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEEEGAVAY WCHMCSRTVD PLMEAEIKCP FCASGFVEEM AEEEEEEHSP NTNSLLAPIL MQVINESSLL TSNQSVDEDA QTEETESGND VDSQLQEILR
101: RRRARRSVSV MQLLDDGDGD GDRERGSLIV VSGASLSEYF IGPGFEALLQ RFTDNDPNRY GTPPAQKEAV EALASVKILE PTLQCSVCLD DFEIGVEAKE
201: MPCEHKFHGE CLLPWLELHS SCPVCRYELP SDETKTETAR TQPNGDGGGS ESSSFASIQE GSENSDGSHH PEEEEEEDSD DDGDDGVEFS IPWLLSSLFS
301: SSQDSSNPSS GTH
101: RRRARRSVSV MQLLDDGDGD GDRERGSLIV VSGASLSEYF IGPGFEALLQ RFTDNDPNRY GTPPAQKEAV EALASVKILE PTLQCSVCLD DFEIGVEAKE
201: MPCEHKFHGE CLLPWLELHS SCPVCRYELP SDETKTETAR TQPNGDGGGS ESSSFASIQE GSENSDGSHH PEEEEEEDSD DDGDDGVEFS IPWLLSSLFS
301: SSQDSSNPSS GTH
001: MEEAVVTRYW CHMCSQTVNP VMEAEIKCPF CQSGFVEEME DDDDHDSSDP ADVRANNSLW APILMELMND PVRRRRNQSV ESVEDNQNEV QTENNEDDGE
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S
Arabidopsis Description
At1g55530/T5A14_7 [Source:UniProtKB/TrEMBL;Acc:Q9ZVU8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.