Factsheet for TraesCS1B01G316300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G305300.1	Wheat	nucleus	99.4	99.4
HORVU1Hr1G068950.2	Barley	golgi	94.58	81.35
Os05t0488800-01	Rice	nucleus	74.7	76.78
Zm00001d010635_P001	Maize	nucleus	63.86	67.95
Zm00001d038528_P001	Maize	cytosol	67.47	67.27
KXG22238	Sorghum	plastid	74.7	63.75
GSMUA_Achr11P...	Banana	nucleus	36.45	44.81
CDY46577	Canola	nucleus	35.24	40.21
CDY10554	Canola	cytosol	35.54	38.69
KRG97316	Soybean	nucleus	39.16	37.79
CDY26096	Canola	nucleus	33.13	37.41
CDY56022	Canola	nucleus	34.64	36.74
Bra027436.1-P	Field mustard	nucleus	34.04	36.57
CDY43991	Canola	nucleus	34.04	36.57
VIT_06s0004g00120.t01	Wine grape	nucleus	40.36	36.41
Bra030854.1-P	Field mustard	nucleus	34.04	36.22
AT3G13430.2	Thale cress	nucleus	34.34	36.19
AT1G55530.2	Thale cress	nucleus	37.65	35.61
PGSC0003DMT400046527	Potato	nucleus	37.95	35.0
Bra037109.1-P	Field mustard	nucleus	34.64	34.43
Bra002823.1-P	Field mustard	nucleus	36.45	34.38
CDY32791	Canola	nucleus	36.45	34.38
CDY08249	Canola	cytosol	34.64	34.33
AT5G56340.1	Thale cress	nucleus	40.66	34.09
CDX92768	Canola	nucleus	31.63	33.98
CDY56080	Canola	cytosol	28.92	33.8
CDX89343	Canola	cytosol, mitochondrion	34.64	32.67
AT4G26400.1	Thale cress	nucleus	34.94	32.58
CDX92770	Canola	nucleus	31.63	32.41
CDY42740	Canola	nucleus	31.33	32.3
TraesCS5B01G480100.1	Wheat	nucleus	38.86	32.09
Bra019109.1-P	Field mustard	nucleus	31.02	31.99
Solyc01g050040.2.1	Tomato	nucleus	28.01	31.85
Bra026444.1-P	Field mustard	nucleus	35.54	31.81
CDY50031	Canola	cytosol	27.41	31.38
Bra037999.1-P	Field mustard	nucleus	27.41	31.38
CDY28208	Canola	cytosol	21.39	30.6
Bra011215.1-P	Field mustard	cytosol	21.39	30.6
CDX94342	Canola	mitochondrion, nucleus	34.64	29.72
TraesCS4B01G174800.1	Wheat	cytosol	31.33	29.71
CDY56081	Canola	nucleus	21.39	29.71
TraesCS3B01G218400.1	Wheat	cytosol	31.33	27.96
KRH70139	Soybean	nucleus	25.6	26.65
KRH08483	Soybean	cytosol, nucleus, plastid	24.7	25.47
TraesCS3B01G474100.1	Wheat	mitochondrion	21.39	24.65
TraesCS1B01G179000.1	Wheat	cytosol, mitochondrion, plastid, vacuole	25.6	23.04
Bra028935.1-P	Field mustard	nucleus	39.16	22.89
TraesCS4B01G209100.1	Wheat	plastid	19.28	22.86
TraesCS7B01G144100.1	Wheat	plastid	17.17	21.19
CDY11934	Canola	nucleus	39.16	19.94
TraesCS6B01G318600.1	Wheat	cytosol, plastid	18.37	19.87
TraesCS3B01G595200.1	Wheat	cytosol	23.8	19.8
CDY23599	Canola	golgi, mitochondrion	34.64	18.88
TraesCS6B01G361600.1	Wheat	mitochondrion	18.37	18.1
TraesCS3B01G361000.1	Wheat	cytosol	18.67	18.08
TraesCS7B01G074800.1	Wheat	mitochondrion	17.47	18.01
TraesCS1B01G036900.1	Wheat	cytosol	21.39	17.79
TraesCS7B01G293600.1	Wheat	cytosol	16.87	16.97
TraesCS6B01G198800.1	Wheat	nucleus	16.27	13.47
TraesCS5B01G144700.1	Wheat	nucleus	19.28	12.55

Protein Annotations

EnsemblPlants:TraesCS1B01G316300.1	EnsemblPlantsGene:TraesCS1B01G316300	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44576	PANTHER:PTHR44576:SF3	PFAM:PF13639	PFAM:PF14369	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr1B:-:540729017..540730106

Molecular Weight (calculated)

36659.8 Da

IEP (calculated)

4.058

GRAVY (calculated)

-0.718

Length

332 amino acids

Sequence
(BLAST)

001: MAEADITRYW CHECQQAVEE AMVEELKCPL CDGGFVEEMT VEQVEALTEQ GATQWDPLDN PFEQAGSPGD SDDEENSDIG REFEGFIRRH RRASALRRVL
101: DSIHDDLRDD RERDNSVLIS AFNQALALQG AALDPDEDRG DHGNANNDDG LLDEYVLGAG LSLLLQHLAE NDPSRYGTPP TKKEAVEALP TVKIEEVVSC
201: SVCLDDLDIG SQAKQLPCEH KFHSPCILPW LELHSSCPVC RFELPSDETK DLSEPSNVDR IESSHEDARA DGPGNNGEDS NTNDREDSNR PWALVPWFNG
301: LFSTPEPQTV RATLTDQQLP PASGTNPNAG HS

Best Arabidopsis Sequence Match ( AT1G55530.2 )
(BLAST)

001: MEEAVVTRYW CHMCSQTVNP VMEAEIKCPF CQSGFVEEME DDDDHDSSDP ADVRANNSLW APILMELMND PVRRRRNQSV ESVEDNQNEV QTENNEDDGE
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S

Arabidopsis Description

At1g55530/T5A14_7 [Source:UniProtKB/TrEMBL;Acc:Q9ZVU8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.