Factsheet for TraesCS3B01G361000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G324300.1	Wheat	mitochondrion	91.84	92.11
TraesCS3A01G330900.1	Wheat	mitochondrion	90.38	76.92
Os01t0802000-01	Rice	nucleus	63.56	66.26
Zm00001d043183_P001	Maize	plastid	62.1	65.54
KXG33564	Sorghum	mitochondrion	55.39	62.91
Zm00001d012564_P001	Maize	mitochondrion	58.89	58.38
TraesCS3B01G474100.1	Wheat	mitochondrion	36.15	43.06
TraesCS7B01G074800.1	Wheat	mitochondrion	23.03	24.53
TraesCS4B01G209100.1	Wheat	plastid	19.83	24.29
TraesCS3B01G595200.1	Wheat	cytosol	25.95	22.31
TraesCS1B01G036900.1	Wheat	cytosol	25.07	21.55
TraesCS1B01G179000.1	Wheat	cytosol, mitochondrion, plastid, vacuole	22.45	20.87
TraesCS6B01G361600.1	Wheat	mitochondrion	20.41	20.77
TraesCS4B01G174800.1	Wheat	cytosol	20.99	20.57
TraesCS1B01G316300.1	Wheat	nucleus	18.08	18.67
TraesCS3B01G218400.1	Wheat	cytosol	18.95	17.47
TraesCS6B01G318600.1	Wheat	cytosol, plastid	14.58	16.29
TraesCS5B01G480100.1	Wheat	nucleus	18.95	16.17
TraesCS7B01G144100.1	Wheat	plastid	11.95	15.24
TraesCS6B01G198800.1	Wheat	nucleus	17.2	14.71
TraesCS7B01G293600.1	Wheat	cytosol	12.83	13.33
TraesCS5B01G144700.1	Wheat	nucleus	17.78	11.96

Protein Annotations

EnsemblPlants:TraesCS3B01G361000.1	EnsemblPlantsGene:TraesCS3B01G361000	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44290	PANTHER:PTHR44290:SF2	PFAM:PF13639	PFAM:PF14369	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16667	MapMan:35.1	:

Description

No Description!

Coordinates

chr3B:+:572744096..572745258

Molecular Weight (calculated)

36967.6 Da

IEP (calculated)

6.911

GRAVY (calculated)

-0.432

Length

343 amino acids

Sequence
(BLAST)

001: MNDELSVILI KFKMSNRATH WCYACRRPIR LRGQDIICPN CNDGFIQEIS EIGGALNNYG MFGPRFDDRL DGRSGMMDAM SALMRRRMAE MGSNPVFDPN
101: AAWASTTQGR PSPIGPRLIF GGSMPAQGSN DSGVNVLVRG GRRIGTDRPN FSGFLVGGTS LEALFEQLLL QTGNRQGPAP ASQSAIDSMP VVKITRRHLS
201: DDPVCPVCTD RFEVGSEARE MPCKHLYHAS CIIPWLVQHN SCPVCRHPLP PQRGSDSNAA RPQPLAHAGE AVSRGVAGAG ADPAPVTRNG DDDGGSPFSF
301: LWPFGSSSPG PSSYQYGGGG GGRPAVYDDD PGQITYSEWH YDP

Best Arabidopsis Sequence Match ( AT2G40830.1 )
(BLAST)

001: MSSSRNTHWC HRCQRAVRLH GQEPVCFYCG GGFVEELDMA QASPFDMFRS HRGVVERDQT FDLMDAFSVF MRNRLAERSH DREIRGRTIS SGPENFPGLA
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY

Arabidopsis Description

RHC1AProbable E3 ubiquitin-protein ligase RHC1A [Source:UniProtKB/Swiss-Prot;Acc:O22197]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.