Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS5A01G382800.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G08139.1 | TraesCS5A01G382800.2 | AT4G14640.1 | 17360592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G246300.1 | Wheat | plastid | 96.65 | 96.65 |
| TraesCS7A01G247700.1 | Wheat | cytosol, plastid | 96.65 | 96.65 |
| Os08t0487500-01 | Rice | plastid | 70.63 | 70.11 |
| Zm00001d031273_P001 | Maize | cytosol, plastid | 61.71 | 57.44 |
| EES14331 | Sorghum | plastid | 62.45 | 57.34 |
| TraesCS4B01G209100.1 | Wheat | plastid | 20.82 | 20.0 |
| TraesCS6B01G318600.1 | Wheat | cytosol, plastid | 22.68 | 19.87 |
| TraesCS1B01G179000.1 | Wheat | cytosol, mitochondrion, plastid, vacuole | 26.02 | 18.97 |
| TraesCS3B01G474100.1 | Wheat | mitochondrion | 19.7 | 18.4 |
| TraesCS4B01G174800.1 | Wheat | cytosol | 23.79 | 18.29 |
| KRH56750 | Soybean | cytosol | 22.3 | 17.54 |
| TraesCS3B01G218400.1 | Wheat | cytosol | 23.79 | 17.2 |
| TraesCS1B01G316300.1 | Wheat | nucleus | 21.19 | 17.17 |
| Solyc02g089410.2.1 | Tomato | nucleus | 20.82 | 17.13 |
| CDX78323 | Canola | cytosol | 18.22 | 17.01 |
| TraesCS7B01G293600.1 | Wheat | cytosol | 20.82 | 16.97 |
| TraesCS6B01G361600.1 | Wheat | mitochondrion | 20.82 | 16.62 |
| Bra005970.1-P | Field mustard | cytosol | 17.84 | 16.55 |
| TraesCS7B01G074800.1 | Wheat | mitochondrion | 19.7 | 16.46 |
| KRH18313 | Soybean | nucleus | 22.68 | 16.31 |
| CDY69134 | Canola | cytosol | 17.47 | 16.15 |
| TraesCS3B01G595200.1 | Wheat | cytosol | 23.79 | 16.04 |
| GSMUA_Achr8P24510_001 | Banana | cytosol | 23.42 | 15.91 |
| PGSC0003DMT400003515 | Potato | nucleus | 21.93 | 15.9 |
| TraesCS1B01G036900.1 | Wheat | cytosol | 23.42 | 15.79 |
| KRG93748 | Soybean | nucleus, plastid | 22.3 | 15.79 |
| KRH03189 | Soybean | nucleus | 20.82 | 15.77 |
| TraesCS5B01G480100.1 | Wheat | nucleus | 23.42 | 15.67 |
| CDY34722 | Canola | cytosol | 22.68 | 15.64 |
| VIT_17s0000g04730.t01 | Wine grape | nucleus | 25.28 | 15.49 |
| CDY34721 | Canola | cytosol | 22.3 | 15.38 |
| Bra008671.1-P | Field mustard | nucleus | 16.36 | 15.33 |
| CDX69496 | Canola | cytosol | 16.36 | 15.28 |
| AT3G02340.2 | Thale cress | cytosol | 23.05 | 15.16 |
| Bra021467.1-P | Field mustard | nucleus | 21.93 | 15.13 |
| AT5G15820.1 | Thale cress | cytosol | 19.33 | 14.94 |
| AT5G08139.1 | Thale cress | cytosol | 20.82 | 14.89 |
| VIT_14s0083g00710.t01 | Wine grape | nucleus | 21.56 | 14.83 |
| CDY02194 | Canola | peroxisome | 21.93 | 14.82 |
| CDY21513 | Canola | cytosol | 19.33 | 14.61 |
| CDY26465 | Canola | cytosol | 18.22 | 14.45 |
| CDX69973 | Canola | cytosol | 19.33 | 14.44 |
| Solyc02g065650.1.1 | Tomato | cytosol, nucleus, plastid | 21.19 | 14.36 |
| PGSC0003DMT400068309 | Potato | cytosol | 21.19 | 14.32 |
| CDY51628 | Canola | peroxisome | 21.19 | 14.04 |
| Bra009323.1-P | Field mustard | cytosol | 19.33 | 13.72 |
| TraesCS6B01G198800.1 | Wheat | nucleus | 20.45 | 13.72 |
| Bra013006.1-P | Field mustard | nucleus | 21.19 | 13.67 |
| AT5G60820.1 | Thale cress | cytosol | 21.19 | 13.6 |
| PGSC0003DMT400063293 | Potato | nucleus | 20.82 | 12.96 |
| CDX90972 | Canola | cytosol | 15.99 | 12.84 |
| GSMUA_Achr3P06300_001 | Banana | cytosol | 24.16 | 12.45 |
| CDX85531 | Canola | cytosol | 15.61 | 12.24 |
| TraesCS3B01G361000.1 | Wheat | cytosol | 15.24 | 11.95 |
| Bra023539.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 17.47 | 11.84 |
| Solyc03g114680.2.1 | Tomato | nucleus | 21.56 | 11.65 |
| TraesCS5B01G144700.1 | Wheat | nucleus | 20.07 | 10.59 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G144100.1 | EnsemblPlantsGene:TraesCS7B01G144100 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44679 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg | SMART:SM00184 |
| SUPFAM:SSF57850 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr7B:-:185299079..185300210
Molecular Weight (calculated)
29638.2 Da
IEP (calculated)
3.938
GRAVY (calculated)
-0.371
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPYLLHRL TADEIFQTLE ASSSTSSSCY DAFVPVFRPD PSSSSLSVSA ADRVRSQFLS VERDLFHDAL VAPRNDDLGF PEENDEEEEA SIRWDCFQLD
101: EEEEPDLPLE ASVSAEEFDW EEVAFASGPL VENPEPDWEM LGDMPPSAPA GANEGFVYTS DREAYEVLVA VGDGLFLTNK PPAARSAVKA LPSAILAAGE
201: EGEGEECSVC KDGVVAGERV KMMPCSHRYH EDCILPWLEV RNSCPLCRFE LPTDNPKYET WKAGRAMAT
101: EEEEPDLPLE ASVSAEEFDW EEVAFASGPL VENPEPDWEM LGDMPPSAPA GANEGFVYTS DREAYEVLVA VGDGLFLTNK PPAARSAVKA LPSAILAAGE
201: EGEGEECSVC KDGVVAGERV KMMPCSHRYH EDCILPWLEV RNSCPLCRFE LPTDNPKYET WKAGRAMAT
001: MGFSPKSVII VSELESATYD ITENYFSLSS DGSFLPSSSR FFCFVVSLSR SEKFAESVMS SGVNSTGSAA AAPEVDKMFF CYQCNQTVTI SISSSADPFC
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQQ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.