Factsheet for Bra021467.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY34721	Canola	cytosol	96.15	96.15
CDY34722	Canola	cytosol	95.13	95.13
AT3G02340.2	Thale cress	cytosol	67.95	64.79
Os06t0633500-01	Rice	cytosol, nucleus	12.82	40.32
Bra023539.1-P	Field mustard	cytoskeleton, cytosol, nucleus	34.87	34.26
VIT_14s0083g00710.t01	Wine grape	nucleus	29.49	29.41
Bra008671.1-P	Field mustard	nucleus	21.54	29.27
KRG93748	Soybean	nucleus, plastid	26.92	27.63
KRH18313	Soybean	nucleus	26.15	27.27
Solyc02g089410.2.1	Tomato	nucleus	22.82	27.22
PGSC0003DMT400003515	Potato	nucleus	25.13	26.42
Solyc02g065650.1.1	Tomato	cytosol, nucleus, plastid	26.15	25.69
PGSC0003DMT400068309	Potato	cytosol	25.38	24.87
Bra005970.1-P	Field mustard	cytosol	18.21	24.48
Bra030136.1-P	Field mustard	cytosol	15.13	24.38
GSMUA_Achr8P24510_001	Banana	cytosol	24.62	24.24
Os08t0487500-01	Rice	plastid	16.41	23.62
Bra014684.1-P	Field mustard	nucleus	11.28	22.92
Bra001767.1-P	Field mustard	nucleus	12.56	22.9
TraesCS6B01G318600.1	Wheat	cytosol, plastid	17.69	22.48
TraesCS7D01G246300.1	Wheat	plastid	15.13	21.93
TraesCS7B01G144100.1	Wheat	plastid	15.13	21.93
Os02t0727700-01	Rice	cytosol, nucleus, plastid	17.44	21.86
Bra009323.1-P	Field mustard	cytosol	21.03	21.64
Bra013006.1-P	Field mustard	nucleus	23.08	21.58
TraesCS7A01G247700.1	Wheat	cytosol, plastid	14.87	21.56
Bra037800.1-P	Field mustard	cytosol	16.67	21.52
TraesCS6A01G288800.1	Wheat	cytosol, plastid	16.92	21.5
EER90075	Sorghum	nucleus	16.41	21.12
OQU85475	Sorghum	cytosol	17.18	20.94
Zm00001d046663_P001	Maize	cytosol	15.9	20.81
GSMUA_Achr3P06300_001	Banana	cytosol	27.69	20.69
Zm00001d051736_P001	Maize	cytosol	17.18	20.3
Zm00001d031273_P001	Maize	cytosol, plastid	14.62	19.72
EES14331	Sorghum	plastid	14.62	19.45
TraesCS7D01G387300.1	Wheat	cytosol	16.15	19.33
Bra004589.1-P	Field mustard	nucleus	11.79	18.85
TraesCS7B01G293600.1	Wheat	cytosol	15.64	18.48
TraesCS7A01G391700.1	Wheat	cytosol	15.64	18.43
Zm00001d053704_P001	Maize	cytosol	16.67	18.26
HORVU6Hr1G072430.1	Barley	cytosol	16.92	18.13
OQU84547	Sorghum	cytoskeleton, cytosol, nucleus	17.44	17.57
Bra007253.1-P	Field mustard	mitochondrion, nucleus	13.85	17.42
Bra005020.1-P	Field mustard	nucleus, plastid	14.62	16.72
Bra038246.1-P	Field mustard	nucleus	13.85	16.62
Bra000207.1-P	Field mustard	mitochondrion, nucleus	13.33	16.4
HORVU7Hr1G092570.1	Barley	cytosol	15.9	16.19
Bra019109.1-P	Field mustard	nucleus	13.33	16.15
Bra037999.1-P	Field mustard	nucleus	11.79	15.86
Bra002823.1-P	Field mustard	nucleus	14.1	15.62
Bra027436.1-P	Field mustard	nucleus	12.31	15.53
Bra011215.1-P	Field mustard	cytosol	9.23	15.52
TraesCS6D01G160300.1	Wheat	nucleus	13.85	15.52
Bra000143.1-P	Field mustard	nucleus	14.87	15.47
Os02t0191500-01	Rice	nucleus	14.62	15.2
HORVU6Hr1G034800.1	Barley	cytosol, nucleus	14.36	15.14
Bra030854.1-P	Field mustard	nucleus	12.05	15.06
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	14.36	15.01
Bra035835.1-P	Field mustard	nucleus	12.31	14.68
Bra028173.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	12.05	14.46
Bra002559.1-P	Field mustard	plastid	14.36	14.11
Bra014266.1-P	Field mustard	nucleus	15.9	14.06
Bra026444.1-P	Field mustard	nucleus	13.33	14.02
Bra006709.1-P	Field mustard	plastid	14.1	13.99
Bra020313.1-P	Field mustard	plastid	13.85	13.88
Bra037109.1-P	Field mustard	nucleus	11.79	13.77
TraesCS6B01G198800.1	Wheat	nucleus	14.1	13.72
Bra028935.1-P	Field mustard	nucleus	14.1	9.68

Protein Annotations

EnsemblPlants:Bra021467.1	EnsemblPlants:Bra021467.1-P	EnsemblPlantsGene:Bra021467	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44679	PANTHER:PTHR44679:SF3	PFAM:PF13639	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000254490B	UniProt:M4DY71	MapMan:35.1

Description

AT3G02340 (E=4e-110) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA01:+:25110709..25111881

Molecular Weight (calculated)

43594.2 Da

IEP (calculated)

3.694

GRAVY (calculated)

-0.604

Length

390 amino acids

Sequence
(BLAST)

001: MASTMKPCPI TNLEEEAEDG GAAVERSIFT QDDESTSVFV CDSPPFHDRD IDCDPYFPFA GHPISDSGSD SELDPYTCPI DFFDRETSEG VYLGSGGLTG
101: DDFNVWGFYE PKEEEEEREI VLGSRCESGS GLDQQPGLRV TGLDSDSDYE DDVFNFTSGE SENVANESGR VEVVTGLPPV WDYDLGDENE EWEEVRNAIN
201: WTVRAFSSSE DEEELSSQSR DDHEEEEEEE DHELDWQVLI TINNVVNYIE QAEGITIDPG DIDPSYYMYL ASLSDGDAAD DAILGQMFDN EVGIRGNPPA
301: AKRIVDDLPV VELTVEEGDV VCAVCKDEMV LEEEVKRLPC RHLYHGECIT PWLGIRNTCP VCRFELPTDD LECERHRGSQ RSNTSFFLAG

Best Arabidopsis Sequence Match ( AT3G02340.2 )
(BLAST)

001: MASTKPDSAI NLEEEAEGDG VAVDDPIFIP ETTNLLVRYS PFDDRDIDCN PYFPFTGPIS DSGSGSYSDS EPDPNSCPID FFDRDSSDVD VAEYLESGGL
101: TAGDYNIWGF YDPKEDEEEE EIVLGTSGSD LQPGDSGEQG LRVTGIDSDS DCEDGVFDFI SEDSSGNRGN DSGRVEVGTG LPPVWDHLFG EGTVLADEEW
201: EEVQNAINWT AFSGPEDEDE EDELSSLSRD DEEEDHELDW QVLLTVNNVV NYIEQAEGIM LNPDDIDPDY YLYLSGLDEF DENHSGHYDA DAILGQMFDD
301: ETGIRGNPPA AKSVIQDLPV VELAVEELDK GNNVCAVCKD EMLVEEKVRR LPCSHFYHGE CIIPWLGIRN TCPVCRYELP TDDLEYERHK SSERGDTGLA
401: RNVLPGRYS

Arabidopsis Description

At3g02340 [Source:UniProtKB/TrEMBL;Acc:Q9FWA5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.