Factsheet for Bra019109.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42740	Canola	nucleus	99.69	99.69
AT4G26400.1	Thale cress	nucleus	75.78	68.54
Bra026444.1-P	Field mustard	nucleus	73.91	64.15
Bra002823.1-P	Field mustard	nucleus	59.63	54.55
KRG97316	Soybean	nucleus	49.69	46.51
GSMUA_Achr11P...	Banana	nucleus	36.65	43.7
VIT_06s0004g00120.t01	Wine grape	nucleus	49.38	43.21
Bra027436.1-P	Field mustard	nucleus	38.82	40.45
Bra030854.1-P	Field mustard	nucleus	39.13	40.38
PGSC0003DMT400046527	Potato	nucleus	45.03	40.28
Bra037109.1-P	Field mustard	nucleus	41.3	39.82
Bra028935.1-P	Field mustard	nucleus	64.91	36.8
Bra037999.1-P	Field mustard	nucleus	31.99	35.52
Os03t0812200-01	Rice	nucleus	38.82	33.88
Zm00001d013005_P002	Maize	nucleus	37.89	32.88
Zm00001d010635_P001	Maize	nucleus	31.37	32.37
KXG37275	Sorghum	nucleus	38.2	32.11
Zm00001d038528_P001	Maize	cytosol	32.92	31.83
Os05t0488800-01	Rice	nucleus	31.68	31.58
Bra001767.1-P	Field mustard	nucleus	20.81	31.31
Bra011215.1-P	Field mustard	cytosol	22.36	31.03
TraesCS1D01G305300.1	Wheat	nucleus	31.99	31.02
TraesCS1B01G316300.1	Wheat	nucleus	31.99	31.02
Bra014684.1-P	Field mustard	nucleus	18.01	30.21
HORVU5Hr1G111530.1	Barley	nucleus	37.27	30.15
TraesCS5B01G480100.1	Wheat	nucleus	37.58	30.1
TraesCS5A01G467700.1	Wheat	nucleus	37.27	29.7
TraesCS5D01G480800.1	Wheat	nucleus	37.27	29.7
KXG22238	Sorghum	plastid	33.23	27.51
HORVU1Hr1G068950.2	Barley	golgi	32.61	27.2
Solyc01g050040.2.1	Tomato	nucleus	24.53	27.05
Bra004589.1-P	Field mustard	nucleus	19.57	25.82
Bra035835.1-P	Field mustard	nucleus	25.16	24.77
Bra038246.1-P	Field mustard	nucleus	24.53	24.31
Bra007253.1-P	Field mustard	mitochondrion, nucleus	23.29	24.19
Bra000207.1-P	Field mustard	mitochondrion, nucleus	23.6	23.97
Bra030136.1-P	Field mustard	cytosol	18.01	23.97
Bra028173.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	19.57	19.38
Bra006709.1-P	Field mustard	plastid	23.6	19.34
Bra002559.1-P	Field mustard	plastid	23.29	18.89
Bra037800.1-P	Field mustard	cytosol	17.7	18.87
Bra020313.1-P	Field mustard	plastid	22.36	18.51
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	21.43	18.5
Bra005020.1-P	Field mustard	nucleus, plastid	19.57	18.48
Bra000143.1-P	Field mustard	nucleus	20.81	17.87
Bra005970.1-P	Field mustard	cytosol	14.91	16.55
Bra009323.1-P	Field mustard	cytosol	17.39	14.78
Bra014266.1-P	Field mustard	nucleus	19.88	14.51
Bra021467.1-P	Field mustard	nucleus	16.15	13.33
Bra008671.1-P	Field mustard	nucleus	11.8	13.24
Bra023539.1-P	Field mustard	cytoskeleton, cytosol, nucleus	14.91	12.09
Bra013006.1-P	Field mustard	nucleus	13.98	10.79

Protein Annotations

EnsemblPlants:Bra019109.1	EnsemblPlants:Bra019109.1-P	EnsemblPlantsGene:Bra019109	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44576	PANTHER:PTHR44576:SF1	PFAM:PF13639	PFAM:PF14369
PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00025411DA	UniProt:M4DRG6
MapMan:35.1	:	:	:	:	:

Description

AT4G26400 (E=2e-060) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA03:-:26288968..26289936

Molecular Weight (calculated)

36648.1 Da

IEP (calculated)

6.373

GRAVY (calculated)

-0.700

Length

322 amino acids

Sequence
(BLAST)

001: MAARYWCHMC SQVVDPIIDA EIKCPYCQSG FLEEMSGENN GGSSSSLREV QDQETDFGTD RALTLWGPVL VGMMSNPRRR RRFRRTEFGV DNVEVNVAGD
101: NPHHHHRRHR DREHEGEIDL DREVDSIMRR RRRSSAAILQ LLQGIREGLN SDHESSIEDY LARPELDHLL RSLADNNLIR RQGTLPARKE AVDNLPMVKI
201: CEPLQCSVCL DEFDKGCEAK EMPCKHKFHI RCIVPWLELH SSCPVCRYEL PPDEELKTDL VRPRTRSVGV NLSNENVEEN ARNISGSERR FSLRWPFSGL
301: FSSSSSSSGS TSGSSQLNEN AS

Best Arabidopsis Sequence Match ( AT4G26400.1 )
(BLAST)

001: MSARYWCHMC SQMVNPVIGA EIKCPFCQSG FVEEMSREIN GGSSSSLREV QDPEIDFGTD RALSLWGPIL LGMMSNPRRR RRFRRTEFGV DNDEVNVSDD
101: VDGNDSVDID RHHHRRHRHR QQGREIDLDR EFESILRRRR RSSATILQLL QGIRAGIASE YESSDRDLLN QSAVVQGSTS LNQNRNNTSL SAIGDYFVGS
201: SLDHLLEHLA DNDSIRHGSL PARKEVVDNL PTVKISESLQ CSICLDDFDK GSEAKEMPCK HKFHIRCIVP WLELHSSCPV CRYELPPDDE TKVNPVRPRT
301: RTLEINVSNE NVEDDARNSN VSERRFSFPW PFSGLFSSSS SSSASASGSS HLGENS

Arabidopsis Description

AT4G26400 protein [Source:UniProtKB/TrEMBL;Acc:Q8L5Z3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.