Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G480800.1 | Wheat | nucleus | 99.01 | 99.01 |
| TraesCS5B01G480100.1 | Wheat | nucleus | 97.52 | 98.01 |
| HORVU5Hr1G111530.1 | Barley | nucleus | 94.31 | 95.73 |
| Os03t0812200-01 | Rice | nucleus | 69.55 | 76.15 |
| KXG37275 | Sorghum | nucleus | 64.11 | 67.62 |
| Zm00001d013005_P002 | Maize | nucleus | 60.64 | 66.04 |
| GSMUA_Achr11P... | Banana | nucleus | 31.93 | 47.78 |
| CDY46577 | Canola | nucleus | 33.42 | 46.39 |
| KRG97316 | Soybean | nucleus | 37.13 | 43.6 |
| VIT_06s0004g00120.t01 | Wine grape | nucleus | 39.11 | 42.93 |
| PGSC0003DMT400046527 | Potato | nucleus | 37.87 | 42.5 |
| Bra027436.1-P | Field mustard | nucleus | 32.43 | 42.39 |
| CDY43991 | Canola | nucleus | 32.43 | 42.39 |
| Bra002823.1-P | Field mustard | nucleus | 35.64 | 40.91 |
| CDY10554 | Canola | cytosol | 30.69 | 40.66 |
| CDY32791 | Canola | nucleus | 35.4 | 40.62 |
| CDX92768 | Canola | nucleus | 30.69 | 40.13 |
| Bra030854.1-P | Field mustard | nucleus | 30.69 | 39.74 |
| AT3G13430.2 | Thale cress | nucleus | 30.94 | 39.68 |
| AT1G55530.2 | Thale cress | nucleus | 33.91 | 39.03 |
| CDY56022 | Canola | nucleus | 29.95 | 38.66 |
| AT5G56340.1 | Thale cress | nucleus | 37.62 | 38.38 |
| CDX92770 | Canola | nucleus | 30.69 | 38.27 |
| CDY42740 | Canola | nucleus | 29.95 | 37.58 |
| Bra037109.1-P | Field mustard | nucleus | 30.94 | 37.43 |
| CDY26096 | Canola | nucleus | 27.23 | 37.41 |
| Bra019109.1-P | Field mustard | nucleus | 29.7 | 37.27 |
| CDY08249 | Canola | cytosol | 30.69 | 37.01 |
| AT4G26400.1 | Thale cress | nucleus | 32.43 | 36.8 |
| CDY28208 | Canola | cytosol | 21.04 | 36.64 |
| Bra011215.1-P | Field mustard | cytosol | 21.04 | 36.64 |
| CDY56080 | Canola | cytosol | 25.74 | 36.62 |
| Bra026444.1-P | Field mustard | nucleus | 32.92 | 35.85 |
| CDX89343 | Canola | cytosol, mitochondrion | 30.94 | 35.51 |
| CDY50031 | Canola | cytosol | 25.25 | 35.17 |
| Bra037999.1-P | Field mustard | nucleus | 25.0 | 34.83 |
| TraesCS4A01G129800.1 | Wheat | cytosol | 26.98 | 33.64 |
| CDY56081 | Canola | nucleus | 19.8 | 33.47 |
| Solyc01g050040.2.1 | Tomato | nucleus | 23.76 | 32.88 |
| CDX94342 | Canola | mitochondrion, nucleus | 31.19 | 32.56 |
| TraesCS3A01G189200.1 | Wheat | cytosol | 30.2 | 32.53 |
| KRH08483 | Soybean | cytosol, nucleus, plastid | 24.01 | 30.12 |
| KRH70139 | Soybean | nucleus | 23.51 | 29.78 |
| TraesCS3A01G440000.1 | Wheat | mitochondrion | 19.55 | 27.34 |
| TraesCS4A01G095800.1 | Wheat | cytosol | 18.07 | 26.07 |
| Bra028935.1-P | Field mustard | nucleus | 36.14 | 25.7 |
| TraesCS4A01G499200.1 | Wheat | cytosol, mitochondrion | 20.79 | 25.07 |
| TraesCS1A01G162400.1 | Wheat | cytosol, mitochondrion, plastid, vacuole | 21.04 | 22.97 |
| TraesCS7A01G247700.1 | Wheat | cytosol, plastid | 15.1 | 22.68 |
| CDY11934 | Canola | nucleus | 36.14 | 22.39 |
| TraesCS1A01G029800.1 | Wheat | cytosol | 21.29 | 21.55 |
| CDY23599 | Canola | golgi, mitochondrion | 32.18 | 21.35 |
| TraesCS7A01G169600.1 | Wheat | cytosol, mitochondrion | 15.1 | 19.12 |
| TraesCS6A01G330700.1 | Wheat | mitochondrion | 15.35 | 19.02 |
| TraesCS6A01G288800.1 | Wheat | cytosol, plastid | 13.37 | 17.59 |
| TraesCS3A01G330900.1 | Wheat | mitochondrion | 16.34 | 16.38 |
| TraesCS7A01G391700.1 | Wheat | cytosol | 11.88 | 14.5 |
| TraesCS5A01G145800.1 | Wheat | nucleus | 14.85 | 11.76 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G467700.1 | EnsemblPlantsGene:TraesCS5A01G467700 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR44576 | PANTHER:PTHR44576:SF4 | PFAM:PF13639 | PFAM:PF14369 |
| PFscan:PS50089 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | TIGR:cd16667 | MapMan:35.1 |
Description
No Description!
Coordinates
chr5A:+:645466624..645470181
Molecular Weight (calculated)
45016.4 Da
IEP (calculated)
4.401
GRAVY (calculated)
-0.998
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEGQESRYW CHSCAEVIVP VEPEKKCPDC DGGFVEEMGS EGFEPSTNVR SERNLSLWAP LLLGMMGGSS RRSRPQRDMM DSSSDEDSRQ ARIRSALRDT
101: DDEDEDDDDD DSDRELEDMI RRRRRRGSSL VRLLQTLRDD LRGLDGIGRD RVRDRDSERD RERERERRDR ERRERERARR ERERARERDR GGERTESLIL
201: INSNNEAIIL QGTFGPSGNQ ENSSNTSTGV SLGDYFLGPG LDMLLQRLAD SDLNRSGTPP AKKESVAALP TVNIQEVLGC TVCLEEFEMG TEAKEMPCQH
301: KFHSNCILPW LELHSSCPIC RFQLPTEESK NPCESGSGGG TVSADGDHAE SSNSDIEGAN HDGGSLLDES SINDRDVTSA LNAIFGDGSS SSSSDENGPC
401: ASES
101: DDEDEDDDDD DSDRELEDMI RRRRRRGSSL VRLLQTLRDD LRGLDGIGRD RVRDRDSERD RERERERRDR ERRERERARR ERERARERDR GGERTESLIL
201: INSNNEAIIL QGTFGPSGNQ ENSSNTSTGV SLGDYFLGPG LDMLLQRLAD SDLNRSGTPP AKKESVAALP TVNIQEVLGC TVCLEEFEMG TEAKEMPCQH
301: KFHSNCILPW LELHSSCPIC RFQLPTEESK NPCESGSGGG TVSADGDHAE SSNSDIEGAN HDGGSLLDES SINDRDVTSA LNAIFGDGSS SSSSDENGPC
401: ASES
001: MEEAVVTRYW CHMCSQTVNP VMEAEIKCPF CQSGFVEEME DDDDHDSSDP ADVRANNSLW APILMELMND PVRRRRNQSV ESVEDNQNEV QTENNEDDGE
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S
Arabidopsis Description
At1g55530/T5A14_7 [Source:UniProtKB/TrEMBL;Acc:Q9ZVU8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.