Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS5A01G382800.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G08139.1 | TraesCS5A01G382800.2 | AT4G14640.1 | 17360592 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G318600.1 | Wheat | cytosol, plastid | 90.23 | 90.23 |
| HORVU6Hr1G072430.1 | Barley | cytosol | 88.27 | 74.45 |
| OQU85475 | Sorghum | cytosol | 64.17 | 61.56 |
| Os02t0727700-01 | Rice | cytosol, nucleus, plastid | 62.22 | 61.41 |
| Zm00001d051736_P001 | Maize | cytosol | 62.87 | 58.48 |
| TraesCS7A01G247700.1 | Wheat | cytosol, plastid | 20.85 | 23.79 |
| TraesCS4A01G095800.1 | Wheat | cytosol | 20.52 | 22.5 |
| TraesCS7A01G391700.1 | Wheat | cytosol | 23.78 | 22.05 |
| Solyc02g089410.2.1 | Tomato | nucleus | 22.8 | 21.41 |
| CDY69134 | Canola | cytosol | 19.87 | 20.96 |
| CDX78323 | Canola | cytosol | 19.22 | 20.49 |
| Bra005970.1-P | Field mustard | cytosol | 19.22 | 20.34 |
| TraesCS4A01G499200.1 | Wheat | cytosol, mitochondrion | 22.15 | 20.3 |
| TraesCS1A01G162400.1 | Wheat | cytosol, mitochondrion, plastid, vacuole | 24.43 | 20.27 |
| KRH56750 | Soybean | cytosol | 22.15 | 19.88 |
| TraesCS3A01G440000.1 | Wheat | mitochondrion | 18.57 | 19.72 |
| GSMUA_Achr8P24510_001 | Banana | cytosol | 25.41 | 19.7 |
| PGSC0003DMT400003515 | Potato | nucleus | 23.45 | 19.41 |
| KRG93748 | Soybean | nucleus, plastid | 23.78 | 19.21 |
| KRH18313 | Soybean | nucleus | 23.13 | 18.98 |
| Solyc02g065650.1.1 | Tomato | cytosol, nucleus, plastid | 24.43 | 18.89 |
| KRH03189 | Soybean | nucleus | 21.82 | 18.87 |
| PGSC0003DMT400063293 | Potato | nucleus | 26.38 | 18.75 |
| PGSC0003DMT400068309 | Potato | cytosol | 24.1 | 18.59 |
| CDX69973 | Canola | cytosol | 21.5 | 18.33 |
| VIT_14s0083g00710.t01 | Wine grape | nucleus | 22.8 | 17.9 |
| VIT_17s0000g04730.t01 | Wine grape | nucleus | 25.41 | 17.77 |
| CDX69496 | Canola | cytosol | 16.61 | 17.71 |
| CDY21513 | Canola | cytosol | 20.52 | 17.7 |
| TraesCS7A01G169600.1 | Wheat | cytosol, mitochondrion | 18.24 | 17.55 |
| AT5G08139.1 | Thale cress | cytosol | 21.5 | 17.55 |
| Bra009323.1-P | Field mustard | cytosol | 21.5 | 17.41 |
| CDY34722 | Canola | cytosol | 21.82 | 17.18 |
| CDY34721 | Canola | cytosol | 21.82 | 17.18 |
| Bra008671.1-P | Field mustard | nucleus | 15.96 | 17.07 |
| Bra021467.1-P | Field mustard | nucleus | 21.5 | 16.92 |
| TraesCS1A01G029800.1 | Wheat | cytosol | 21.82 | 16.79 |
| TraesCS4A01G129800.1 | Wheat | cytosol | 17.59 | 16.67 |
| TraesCS3A01G189200.1 | Wheat | cytosol | 19.87 | 16.27 |
| TraesCS6A01G330700.1 | Wheat | mitochondrion | 17.26 | 16.26 |
| AT3G02340.2 | Thale cress | cytosol | 21.17 | 15.89 |
| Solyc03g114680.2.1 | Tomato | nucleus | 25.73 | 15.86 |
| AT5G15820.1 | Thale cress | cytosol | 17.92 | 15.8 |
| CDY02194 | Canola | peroxisome | 19.87 | 15.33 |
| GSMUA_Achr3P06300_001 | Banana | cytosol | 26.06 | 15.33 |
| CDY51628 | Canola | peroxisome | 20.2 | 15.27 |
| CDY26465 | Canola | cytosol | 16.61 | 15.04 |
| CDX85531 | Canola | cytosol | 16.61 | 14.87 |
| CDX90972 | Canola | cytosol | 15.96 | 14.63 |
| AT5G60820.1 | Thale cress | cytosol | 19.87 | 14.56 |
| Bra013006.1-P | Field mustard | nucleus | 19.54 | 14.39 |
| Bra023539.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 17.92 | 13.85 |
| TraesCS5A01G467700.1 | Wheat | nucleus | 17.59 | 13.37 |
| TraesCS5A01G145800.1 | Wheat | nucleus | 19.87 | 11.96 |
| TraesCS3A01G330900.1 | Wheat | mitochondrion | 14.66 | 11.17 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G288800.1 | EnsemblPlantsGene:TraesCS6A01G288800 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44679 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg | SMART:SM00184 |
| SUPFAM:SSF57850 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr6A:+:520845911..520847049
Molecular Weight (calculated)
32855.6 Da
IEP (calculated)
4.082
GRAVY (calculated)
-0.385
Length
307 amino acids
Sequence
(BLAST)
(BLAST)
001: MANNSLSHHL LLPLAGDDDP ASSSSSSALA FPSFWPPFPS LLSDSDPDAP FFPPRRMDRR VAARQDTAAA FLGLDFHDED YGADWAWAAP DDPGLPLCWD
101: CLQLEEHDAH QRWDLALSDA DEWEQVAARG HEEEAEPPAA RSLEWEVLLA ASSLGGLIID EDVDDAGVIG GGGIETYFLD GGADDDDDML FGQVAAEAGH
201: EPPAKGGRAA AKAAVEGLPT VVDAARGGAQ CAVCKDGIEA GEGARRLPCA HLYHDACILP WLAIRNTCPL CRHELPTDDP DYEKWKARRD ADANGDRYGI
301: AAGHPAE
101: CLQLEEHDAH QRWDLALSDA DEWEQVAARG HEEEAEPPAA RSLEWEVLLA ASSLGGLIID EDVDDAGVIG GGGIETYFLD GGADDDDDML FGQVAAEAGH
201: EPPAKGGRAA AKAAVEGLPT VVDAARGGAQ CAVCKDGIEA GEGARRLPCA HLYHDACILP WLAIRNTCPL CRHELPTDDP DYEKWKARRD ADANGDRYGI
301: AAGHPAE
001: MDDLLHQRVE QSQVTPPHDD SNIHGDFDNE ATDESRSETC SVVIEGNCDM VIELGLESGS VIVENLGDSD IDVSNDFDEP DDDDFFVGRT DFGLEFRDIA
101: SSGNDIRLIT VESGSDDDDG VENERELWGI DLNEEDVYVN DDDEYEDDDV SVTIPLCWDS LQLEDREVTA DEFDWEEVGG GGGGGVDDER EIRSGFAQID
201: MNDESLISAS PIISLEGLVT RERAEGSGNL GWEVLLNHTL EINFDVDNRE LYIGGDHDDY VQDYDMLFEQ FADAEVSVIG LPPTSKSFLN NLPVVLLEGE
301: NDDDGGLVCA VCKDEMNIGN KAVQLPCNHK YHSECIVPWL KVRNTCPVCR YELPTDDAEY EQRKTQRTTN TFGMVL
101: SSGNDIRLIT VESGSDDDDG VENERELWGI DLNEEDVYVN DDDEYEDDDV SVTIPLCWDS LQLEDREVTA DEFDWEEVGG GGGGGVDDER EIRSGFAQID
201: MNDESLISAS PIISLEGLVT RERAEGSGNL GWEVLLNHTL EINFDVDNRE LYIGGDHDDY VQDYDMLFEQ FADAEVSVIG LPPTSKSFLN NLPVVLLEGE
301: NDDDGGLVCA VCKDEMNIGN KAVQLPCNHK YHSECIVPWL KVRNTCPVCR YELPTDDAEY EQRKTQRTTN TFGMVL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GYG0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.