Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P24510_001 | Banana | cytosol | 43.1 | 56.82 |
| Os06t0633500-01 | Rice | cytosol, nucleus | 9.58 | 40.32 |
| KRH18313 | Soybean | nucleus | 26.63 | 37.17 |
| KRG93748 | Soybean | nucleus, plastid | 26.05 | 35.79 |
| VIT_14s0083g00710.t01 | Wine grape | nucleus | 25.29 | 33.76 |
| PGSC0003DMT400003515 | Potato | nucleus | 23.75 | 33.42 |
| Solyc02g065650.1.1 | Tomato | cytosol, nucleus, plastid | 25.1 | 33.0 |
| Solyc02g089410.2.1 | Tomato | nucleus | 20.5 | 32.72 |
| KRH56750 | Soybean | cytosol | 21.07 | 32.16 |
| PGSC0003DMT400068309 | Potato | cytosol | 23.95 | 31.41 |
| VIT_17s0000g04730.t01 | Wine grape | nucleus | 25.67 | 30.52 |
| KRH03189 | Soybean | nucleus | 20.69 | 30.42 |
| CDY34722 | Canola | cytosol | 21.84 | 29.23 |
| CDY34721 | Canola | cytosol | 21.26 | 28.46 |
| OQU85475 | Sorghum | cytosol | 17.24 | 28.12 |
| Bra021467.1-P | Field mustard | nucleus | 20.69 | 27.69 |
| PGSC0003DMT400063293 | Potato | nucleus | 22.8 | 27.55 |
| Zm00001d051736_P001 | Maize | cytosol | 17.05 | 26.97 |
| AT5G08139.1 | Thale cress | cytosol | 18.97 | 26.33 |
| CDX90972 | Canola | cytosol | 16.86 | 26.27 |
| AT3G02340.2 | Thale cress | cytosol | 20.5 | 26.16 |
| TraesCS6A01G288800.1 | Wheat | cytosol, plastid | 15.33 | 26.06 |
| TraesCS6B01G318600.1 | Wheat | cytosol, plastid | 15.33 | 26.06 |
| CDX78323 | Canola | cytosol | 14.37 | 26.04 |
| Os08t0487500-01 | Rice | plastid | 13.41 | 25.83 |
| Solyc03g114680.2.1 | Tomato | nucleus | 24.52 | 25.7 |
| GSMUA_Achr5P19380_001 | Banana | plastid | 9.39 | 25.65 |
| CDY21513 | Canola | cytosol | 17.43 | 25.56 |
| CDY69134 | Canola | cytosol | 14.18 | 25.43 |
| CDX69973 | Canola | cytosol | 17.43 | 25.28 |
| Bra005970.1-P | Field mustard | cytosol | 13.98 | 25.17 |
| CDY02194 | Canola | peroxisome | 19.16 | 25.13 |
| CDY51628 | Canola | peroxisome | 19.54 | 25.12 |
| CDY26465 | Canola | cytosol | 16.28 | 25.07 |
| Os02t0727700-01 | Rice | cytosol, nucleus, plastid | 14.75 | 24.76 |
| TraesCS7D01G246300.1 | Wheat | plastid | 12.64 | 24.54 |
| AT5G15820.1 | Thale cress | cytosol | 16.28 | 24.43 |
| Bra013006.1-P | Field mustard | nucleus | 19.35 | 24.22 |
| CDX85531 | Canola | cytosol | 15.9 | 24.2 |
| TraesCS7A01G247700.1 | Wheat | cytosol, plastid | 12.45 | 24.16 |
| TraesCS7B01G144100.1 | Wheat | plastid | 12.45 | 24.16 |
| Bra009323.1-P | Field mustard | cytosol | 17.43 | 24.01 |
| CDX69496 | Canola | cytosol | 13.03 | 23.61 |
| EES14331 | Sorghum | plastid | 13.22 | 23.55 |
| Bra008671.1-P | Field mustard | nucleus | 12.84 | 23.34 |
| Zm00001d031273_P001 | Maize | cytosol, plastid | 12.84 | 23.18 |
| HORVU6Hr1G072430.1 | Barley | cytosol | 15.71 | 22.53 |
| AT5G60820.1 | Thale cress | cytosol | 18.01 | 22.43 |
| Zm00001d046663_P001 | Maize | cytosol | 12.26 | 21.48 |
| Bra023539.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 16.09 | 21.16 |
| GSMUA_Achr9P05060_001 | Banana | nucleus | 7.09 | 19.89 |
| EER90075 | Sorghum | nucleus | 11.49 | 19.8 |
| TraesCS7B01G293600.1 | Wheat | cytosol | 12.07 | 19.09 |
| TraesCS7D01G387300.1 | Wheat | cytosol | 11.88 | 19.02 |
| Zm00001d053704_P001 | Maize | cytosol | 12.84 | 18.82 |
| TraesCS7A01G391700.1 | Wheat | cytosol | 11.88 | 18.73 |
| GSMUA_Achr2P03780_001 | Banana | cytosol | 12.26 | 18.23 |
| GSMUA_Achr8P09890_001 | Banana | nucleus | 7.85 | 17.75 |
| GSMUA_Achr5P07070_001 | Banana | nucleus | 11.11 | 17.63 |
| OQU84547 | Sorghum | cytoskeleton, cytosol, nucleus | 13.03 | 17.57 |
| GSMUA_Achr7P13060_001 | Banana | mitochondrion | 8.24 | 17.48 |
| Os02t0191500-01 | Rice | nucleus | 12.45 | 17.33 |
| TraesCS6D01G160300.1 | Wheat | nucleus | 11.3 | 16.95 |
| GSMUA_Achr7P15040_001 | Banana | mitochondrion | 10.15 | 16.77 |
| HORVU6Hr1G034800.1 | Barley | cytosol, nucleus | 11.69 | 16.49 |
| GSMUA_Achr10P... | Banana | mitochondrion | 10.54 | 16.32 |
| HORVU7Hr1G092570.1 | Barley | cytosol | 11.88 | 16.19 |
| GSMUA_Achr10P... | Banana | nucleus | 8.62 | 15.96 |
| GSMUA_Achr11P... | Banana | nucleus | 8.24 | 15.93 |
| GSMUA_AchrUn_... | Banana | nucleus | 7.85 | 15.89 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 7.66 | 15.44 |
| GSMUA_Achr6P23590_001 | Banana | mitochondrion, nucleus | 10.15 | 15.41 |
| GSMUA_AchrUn_... | Banana | mitochondrion, plastid | 10.34 | 15.38 |
| TraesCS6B01G198800.1 | Wheat | nucleus | 11.69 | 15.21 |
| GSMUA_Achr6P08590_001 | Banana | nucleus | 8.43 | 15.02 |
| GSMUA_Achr10P... | Banana | nucleus | 8.62 | 14.85 |
| GSMUA_Achr5P07680_001 | Banana | nucleus | 8.43 | 14.77 |
| GSMUA_Achr10P... | Banana | mitochondrion | 10.92 | 14.18 |
| GSMUA_Achr2P19140_001 | Banana | mitochondrion | 9.77 | 14.09 |
| GSMUA_Achr11P... | Banana | mitochondrion | 8.05 | 14.05 |
| GSMUA_Achr7P18340_001 | Banana | nucleus | 8.05 | 14.0 |
| GSMUA_Achr4P02460_001 | Banana | nucleus | 10.54 | 13.29 |
| GSMUA_Achr11P... | Banana | cytosol | 12.84 | 9.24 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P06300_001 | EnsemblPlants:GSMUA_Achr3T06300_001 | EnsemblPlantsGene:GSMUA_Achr3G06300_001 | Gene3D:3.30.40.10 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44679 |
| PFAM:PF13639 | PFscan:PS50089 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | TMHMM:TMhelix |
| UniParc:UPI000294D3DF | UniProt:M0SC97 | MapMan:35.1 | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G06300_001]
Coordinates
chr3:-:4268903..4275780
Molecular Weight (calculated)
57835.4 Da
IEP (calculated)
3.979
GRAVY (calculated)
-0.481
Length
522 amino acids
Sequence
(BLAST)
(BLAST)
001: MADAPNLFLR LTDDRDHQEP PARFPPPRSF WPSQSAAGSA IADRDPFVPV FSSGPTFGEL DSGSDYSGYS DDDDDDDHAT LSLDLFRRPP PSVSGAAMDP
101: FPEPFGSPVF RVSEGPEEIG PPCSLDIGLG LGLGSGFERD DDNDAGEDVD REVVVPDWAA DDFFIGRRSS PSESTEFSRA RPVGSGGLRV VGFDSDSDSD
201: GQIVAMGNEQ IAGISDDGEV DRYRISDDLG LPLCWDTLQL SDGRRDANEG FDWEEIDGQD VERDVEPEDV VRNVNWEILL AMNNLGRSPF DPDDVEAYFE
301: DQDGLVYTSD YESYEVLFGH FTEQDGNTKG SPPAAKSVVE NLPSAVMTKE DAADIDADCA VCKDGIVAED RVKRLPCLHH YHEECILPWL GIRNTCPLCR
401: FELPTDDPEY EKQKAWRAGG SVIPGDEAPL RYTTINLFFT YWCVVAVFTM ANIFLIDATF QSLCLLTVFV QSFQVRCVES SKVDYVGVKC DVEEHKKVLC
501: LRSQRDCLQE TDNNSPKSRN ER
101: FPEPFGSPVF RVSEGPEEIG PPCSLDIGLG LGLGSGFERD DDNDAGEDVD REVVVPDWAA DDFFIGRRSS PSESTEFSRA RPVGSGGLRV VGFDSDSDSD
201: GQIVAMGNEQ IAGISDDGEV DRYRISDDLG LPLCWDTLQL SDGRRDANEG FDWEEIDGQD VERDVEPEDV VRNVNWEILL AMNNLGRSPF DPDDVEAYFE
301: DQDGLVYTSD YESYEVLFGH FTEQDGNTKG SPPAAKSVVE NLPSAVMTKE DAADIDADCA VCKDGIVAED RVKRLPCLHH YHEECILPWL GIRNTCPLCR
401: FELPTDDPEY EKQKAWRAGG SVIPGDEAPL RYTTINLFFT YWCVVAVFTM ANIFLIDATF QSLCLLTVFV QSFQVRCVES SKVDYVGVKC DVEEHKKVLC
501: LRSQRDCLQE TDNNSPKSRN ER
001: MASTKPDSAI NLEEEAEGDG VAVDDPIFIP ETTNLLVRYS PFDDRDIDCN PYFPFTGPIS DSGSGSYSDS EPDPNSCPID FFDRDSSDVD VAEYLESGGL
101: TAGDYNIWGF YDPKEDEEEE EIVLGTSGSD LQPGDSGEQG LRVTGIDSDS DCEDGVFDFI SEDSSGNRGN DSGRVEVGTG LPPVWDHLFG EGTVLADEEW
201: EEVQNAINWT AFSGPEDEDE EDELSSLSRD DEEEDHELDW QVLLTVNNVV NYIEQAEGIM LNPDDIDPDY YLYLSGLDEF DENHSGHYDA DAILGQMFDD
301: ETGIRGNPPA AKSVIQDLPV VELAVEELDK GNNVCAVCKD EMLVEEKVRR LPCSHFYHGE CIIPWLGIRN TCPVCRYELP TDDLEYERHK SSERGDTGLA
401: RNVLPGRYS
101: TAGDYNIWGF YDPKEDEEEE EIVLGTSGSD LQPGDSGEQG LRVTGIDSDS DCEDGVFDFI SEDSSGNRGN DSGRVEVGTG LPPVWDHLFG EGTVLADEEW
201: EEVQNAINWT AFSGPEDEDE EDELSSLSRD DEEEDHELDW QVLLTVNNVV NYIEQAEGIM LNPDDIDPDY YLYLSGLDEF DENHSGHYDA DAILGQMFDD
301: ETGIRGNPPA AKSVIQDLPV VELAVEELDK GNNVCAVCKD EMLVEEKVRR LPCSHFYHGE CIIPWLGIRN TCPVCRYELP TDDLEYERHK SSERGDTGLA
401: RNVLPGRYS
Arabidopsis Description
At3g02340 [Source:UniProtKB/TrEMBL;Acc:Q9FWA5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.