Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021467.1-P | Field mustard | nucleus | 64.79 | 67.95 |
| CDY34722 | Canola | cytosol | 63.57 | 66.67 |
| CDY34721 | Canola | cytosol | 63.33 | 66.41 |
| AT5G15820.1 | Thale cress | cytosol | 36.19 | 42.53 |
| Os06t0633500-01 | Rice | cytosol, nucleus | 12.22 | 40.32 |
| VIT_14s0083g00710.t01 | Wine grape | nucleus | 29.58 | 30.95 |
| Solyc02g089410.2.1 | Tomato | nucleus | 23.72 | 29.66 |
| KRH18313 | Soybean | nucleus | 26.65 | 29.14 |
| PGSC0003DMT400003515 | Potato | nucleus | 25.92 | 28.57 |
| Solyc02g065650.1.1 | Tomato | cytosol, nucleus, plastid | 27.63 | 28.46 |
| PGSC0003DMT400068309 | Potato | cytosol | 27.63 | 28.39 |
| KRG93748 | Soybean | nucleus, plastid | 25.92 | 27.89 |
| GSMUA_Achr8P24510_001 | Banana | cytosol | 25.92 | 26.77 |
| AT5G08139.1 | Thale cress | cytosol | 22.25 | 24.2 |
| Os08t0487500-01 | Rice | plastid | 15.89 | 23.99 |
| TraesCS7B01G144100.1 | Wheat | plastid | 15.16 | 23.05 |
| TraesCS7D01G246300.1 | Wheat | plastid | 15.16 | 23.05 |
| TraesCS7A01G247700.1 | Wheat | cytosol, plastid | 14.91 | 22.68 |
| AT5G60820.1 | Thale cress | cytosol | 22.25 | 21.72 |
| Os02t0727700-01 | Rice | cytosol, nucleus, plastid | 16.38 | 21.54 |
| TraesCS6B01G318600.1 | Wheat | cytosol, plastid | 16.14 | 21.5 |
| Zm00001d031273_P001 | Maize | cytosol, plastid | 15.16 | 21.45 |
| TraesCS6A01G288800.1 | Wheat | cytosol, plastid | 15.89 | 21.17 |
| AT5G64920.1 | Thale cress | cytosol | 17.11 | 20.96 |
| EES14331 | Sorghum | plastid | 14.91 | 20.82 |
| EER90075 | Sorghum | nucleus | 15.4 | 20.79 |
| OQU85475 | Sorghum | cytosol | 16.14 | 20.62 |
| GSMUA_Achr3P06300_001 | Banana | cytosol | 26.16 | 20.5 |
| Zm00001d046663_P001 | Maize | cytosol | 14.91 | 20.47 |
| Zm00001d051736_P001 | Maize | cytosol | 16.38 | 20.3 |
| TraesCS7D01G387300.1 | Wheat | cytosol | 15.89 | 19.94 |
| TraesCS7B01G293600.1 | Wheat | cytosol | 15.4 | 19.09 |
| TraesCS7A01G391700.1 | Wheat | cytosol | 15.4 | 19.03 |
| HORVU6Hr1G072430.1 | Barley | cytosol | 15.89 | 17.86 |
| Zm00001d053704_P001 | Maize | cytosol | 14.91 | 17.13 |
| HORVU7Hr1G092570.1 | Barley | cytosol | 15.65 | 16.71 |
| OQU84547 | Sorghum | cytoskeleton, cytosol, nucleus | 14.91 | 15.76 |
| TraesCS6D01G160300.1 | Wheat | nucleus | 12.96 | 15.23 |
| Os02t0191500-01 | Rice | nucleus | 13.94 | 15.2 |
| AT2G39720.2 | Thale cress | nucleus | 14.43 | 14.71 |
| AT3G56580.1 | Thale cress | mitochondrion | 11.25 | 14.38 |
| HORVU6Hr1G034800.1 | Barley | cytosol, nucleus | 12.71 | 14.05 |
| AT2G40830.4 | Thale cress | mitochondrion | 11.25 | 14.02 |
| AT3G19950.2 | Thale cress | cytosol | 13.2 | 13.99 |
| AT3G46620.1 | Thale cress | cytosol, plastid | 13.45 | 13.92 |
| AT4G26400.1 | Thale cress | nucleus | 11.74 | 13.48 |
| TraesCS6B01G198800.1 | Wheat | nucleus | 13.2 | 13.47 |
| AT1G60360.1 | Thale cress | nucleus | 10.76 | 13.46 |
| AT5G56340.1 | Thale cress | nucleus | 12.96 | 13.38 |
| AT3G13430.2 | Thale cress | nucleus | 10.27 | 13.33 |
| AT5G01980.1 | Thale cress | nucleus | 14.91 | 12.37 |
| AT1G55530.2 | Thale cress | nucleus | 9.78 | 11.4 |
| AT5G59550.2 | Thale cress | nucleus, plastid | 12.22 | 9.77 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:821090 | ProteinID:AAG12602.1 | ProteinID:AEE73794.1 | EMBL:AK227808 |
| ProteinID:ANM65223.1 | ArrayExpress:AT3G02340 | EnsemblPlantsGene:AT3G02340 | RefSeq:AT3G02340 | TAIR:AT3G02340 | RefSeq:AT3G02340-TAIR-G |
| EnsemblPlants:AT3G02340.2 | Unigene:At.41149 | EMBL:BT006207 | GO:GO:0000209 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016740 |
| GO:GO:0019538 | GO:GO:0042787 | GO:GO:0043161 | GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 |
| RefSeq:NP_001327209.1 | RefSeq:NP_186883.1 | PFAM:PF13639 | PFscan:PS50089 | PANTHER:PTHR44679 | UniProt:Q9FWA5 |
| SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00000A51CD | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
At3g02340 [Source:UniProtKB/TrEMBL;Acc:Q9FWA5]
Coordinates
chr3:+:477003..478886
Molecular Weight (calculated)
45345.0 Da
IEP (calculated)
3.626
GRAVY (calculated)
-0.639
Length
409 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTKPDSAI NLEEEAEGDG VAVDDPIFIP ETTNLLVRYS PFDDRDIDCN PYFPFTGPIS DSGSGSYSDS EPDPNSCPID FFDRDSSDVD VAEYLESGGL
101: TAGDYNIWGF YDPKEDEEEE EIVLGTSGSD LQPGDSGEQG LRVTGIDSDS DCEDGVFDFI SEDSSGNRGN DSGRVEVGTG LPPVWDHLFG EGTVLADEEW
201: EEVQNAINWT AFSGPEDEDE EDELSSLSRD DEEEDHELDW QVLLTVNNVV NYIEQAEGIM LNPDDIDPDY YLYLSGLDEF DENHSGHYDA DAILGQMFDD
301: ETGIRGNPPA AKSVIQDLPV VELAVEELDK GNNVCAVCKD EMLVEEKVRR LPCSHFYHGE CIIPWLGIRN TCPVCRYELP TDDLEYERHK SSERGDTGLA
401: RNVLPGRYS
101: TAGDYNIWGF YDPKEDEEEE EIVLGTSGSD LQPGDSGEQG LRVTGIDSDS DCEDGVFDFI SEDSSGNRGN DSGRVEVGTG LPPVWDHLFG EGTVLADEEW
201: EEVQNAINWT AFSGPEDEDE EDELSSLSRD DEEEDHELDW QVLLTVNNVV NYIEQAEGIM LNPDDIDPDY YLYLSGLDEF DENHSGHYDA DAILGQMFDD
301: ETGIRGNPPA AKSVIQDLPV VELAVEELDK GNNVCAVCKD EMLVEEKVRR LPCSHFYHGE CIIPWLGIRN TCPVCRYELP TDDLEYERHK SSERGDTGLA
401: RNVLPGRYS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.