Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18690 | Canola | cytosol, peroxisome, plastid | 73.35 | 81.94 |
| CDX81263 | Canola | cytosol, peroxisome, plastid | 70.96 | 81.72 |
| Bra037800.1-P | Field mustard | cytosol | 73.05 | 80.79 |
| KRG90607 | Soybean | nucleus | 51.5 | 51.04 |
| KRH36150 | Soybean | nucleus | 50.6 | 50.75 |
| CDY32333 | Canola | cytosol | 33.53 | 47.66 |
| VIT_18s0001g14530.t01 | Wine grape | cytosol, nucleus, plastid | 47.01 | 47.01 |
| Solyc09g074460.1.1 | Tomato | nucleus | 50.3 | 44.56 |
| PGSC0003DMT400081469 | Potato | nucleus | 50.3 | 44.44 |
| CDX94665 | Canola | nucleus | 31.14 | 44.26 |
| CDY68603 | Canola | cytosol | 31.44 | 43.39 |
| Bra030136.1-P | Field mustard | cytosol | 31.44 | 43.39 |
| AT3G13430.2 | Thale cress | nucleus | 21.56 | 22.86 |
| AT2G40830.4 | Thale cress | mitochondrion | 21.56 | 21.95 |
| AT3G56580.1 | Thale cress | mitochondrion | 20.96 | 21.88 |
| AT3G46620.1 | Thale cress | cytosol, plastid | 23.95 | 20.25 |
| AT1G55530.2 | Thale cress | nucleus | 21.26 | 20.23 |
| AT5G56340.1 | Thale cress | nucleus | 23.65 | 19.95 |
| AT3G19950.2 | Thale cress | cytosol | 22.16 | 19.17 |
| AT1G60360.1 | Thale cress | nucleus | 18.56 | 18.96 |
| AT4G26400.1 | Thale cress | nucleus | 20.06 | 18.82 |
| AT5G15820.1 | Thale cress | cytosol | 18.86 | 18.1 |
| AT2G39720.2 | Thale cress | nucleus | 21.26 | 17.71 |
| AT3G02340.2 | Thale cress | cytosol | 20.96 | 17.11 |
| AT5G08139.1 | Thale cress | cytosol | 18.86 | 16.76 |
| AT5G59550.2 | Thale cress | nucleus, plastid | 23.05 | 15.04 |
| AT5G60820.1 | Thale cress | cytosol | 18.26 | 14.56 |
| AT5G01980.1 | Thale cress | nucleus | 20.36 | 13.79 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:836616 | UniProt:A0A178UJC6 | UniProt:A6XFC3 | ProteinID:AED97970.1 |
| EMBL:AF162150 | ArrayExpress:AT5G64920 | EnsemblPlantsGene:AT5G64920 | RefSeq:AT5G64920 | TAIR:AT5G64920 | RefSeq:AT5G64920-TAIR-G |
| EnsemblPlants:AT5G64920.1 | TAIR:AT5G64920.1 | EMBL:AY081279 | Unigene:At.75593 | ProteinID:BAA97304.1 | EMBL:BT008730 |
| Symbol:CIP8 | EMBL:DQ680155 | GO:GO:0000209 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0019538 | GO:GO:0042787 | GO:GO:0043161 | GO:GO:0046872 | GO:GO:0061630 | InterPro:IPR001841 |
| InterPro:IPR013083 | RefSeq:NP_201297.1 | ProteinID:OAO93640.1 | PFAM:PF13639 | PFAM:PF14369 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50089 | PANTHER:PTHR44679 | PANTHER:PTHR44679:SF3 |
| UniProt:Q9SPL2 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000004E9BC | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
CIP8CIP8 [Source:UniProtKB/TrEMBL;Acc:A0A178UJC6]
Coordinates
chr5:-:25943888..25945442
Molecular Weight (calculated)
36967.0 Da
IEP (calculated)
4.036
GRAVY (calculated)
-0.736
Length
334 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDAPSSSPD ATASHWCYHC NKRVVVETLD DFVVCCECNK GFVESIQPTP AAYSSPAPPQ PLSPDLNVED SSIGSHFLQM LRLLAHAPSQ RSPPRHLDVL
101: SYEDDFFRLE LNSRNEIDDD EDEDEDDGDE EEEDEEENLT VNDEEDEEDD LRRRNRFPLT TTQSRTGRNR ILDWAEILMG IEDNSIEFRM ESDRYAGNPA
201: DYIDDAAGYE ALLQNLAEGD GGGGGGRRGA PPAAKSAIEA LETFEVSSSE GEMVMVCAVC KDGMVMGETG KKLPCGHCYH GDCIVPWLGT RNSCPVCRFQ
301: LETDDAEYEE ERKKRTSTVS DSAAASSSSS TSRY
101: SYEDDFFRLE LNSRNEIDDD EDEDEDDGDE EEEDEEENLT VNDEEDEEDD LRRRNRFPLT TTQSRTGRNR ILDWAEILMG IEDNSIEFRM ESDRYAGNPA
201: DYIDDAAGYE ALLQNLAEGD GGGGGGRRGA PPAAKSAIEA LETFEVSSSE GEMVMVCAVC KDGMVMGETG KKLPCGHCYH GDCIVPWLGT RNSCPVCRFQ
301: LETDDAEYEE ERKKRTSTVS DSAAASSSSS TSRY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.