Factsheet for Bra030136.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005541.1-P
Bra012818.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64920.1	Bra005541.1-P	AT2G32950.1	10488108
AT5G64920.1	Bra005541.1-P	AT2G32950.1	12028569
AT5G64920.1	Bra005541.1-P	AT2G32950.1	12827204
AT5G64920.1	Bra012818.1-P	AT3G52155.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68603	Canola	cytosol	100.0	100.0
Bra037800.1-P	Field mustard	cytosol	42.98	34.44
AT5G64920.1	Thale cress	cytosol	43.39	31.44
KRG90607	Soybean	nucleus	40.08	28.78
KRH36150	Soybean	nucleus	38.02	27.63
VIT_18s0001g14530.t01	Wine grape	cytosol, nucleus, plastid	35.54	25.75
Solyc09g074460.1.1	Tomato	nucleus	38.02	24.4
PGSC0003DMT400081469	Potato	nucleus	37.19	23.81
Bra027436.1-P	Field mustard	nucleus	28.93	22.65
Bra001767.1-P	Field mustard	nucleus	19.83	22.43
Bra014684.1-P	Field mustard	nucleus	16.94	21.35
Bra037999.1-P	Field mustard	nucleus	25.21	21.03
Bra011215.1-P	Field mustard	cytosol	19.42	20.26
Bra030854.1-P	Field mustard	nucleus	26.03	20.19
Bra037109.1-P	Field mustard	nucleus	26.45	19.16
Bra007253.1-P	Field mustard	mitochondrion, nucleus	23.55	18.39
Bra035835.1-P	Field mustard	nucleus	24.79	18.35
Bra026444.1-P	Field mustard	nucleus	28.1	18.33
Bra038246.1-P	Field mustard	nucleus	24.38	18.15
Bra019109.1-P	Field mustard	nucleus	23.97	18.01
Bra000207.1-P	Field mustard	mitochondrion, nucleus	23.55	17.98
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	27.69	17.96
Bra000143.1-P	Field mustard	nucleus	27.69	17.87
Bra005020.1-P	Field mustard	nucleus, plastid	24.79	17.6
Bra002559.1-P	Field mustard	plastid	28.51	17.38
Bra004589.1-P	Field mustard	nucleus	17.36	17.21
Bra006709.1-P	Field mustard	plastid	27.69	17.05
Bra002823.1-P	Field mustard	nucleus	24.38	16.76
Bra020313.1-P	Field mustard	plastid	26.86	16.71
Bra005970.1-P	Field mustard	cytosol	19.42	16.21
Bra028173.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	21.07	15.69
Bra021467.1-P	Field mustard	nucleus	24.38	15.13
Bra008671.1-P	Field mustard	nucleus	16.53	13.94
Bra009323.1-P	Field mustard	cytosol	20.66	13.19
Bra014266.1-P	Field mustard	nucleus	23.97	13.15
Bra023539.1-P	Field mustard	cytoskeleton, cytosol, nucleus	20.25	12.34
Bra028935.1-P	Field mustard	nucleus	28.93	12.32
Bra013006.1-P	Field mustard	nucleus	20.25	11.75

Protein Annotations

EnsemblPlants:Bra030136.1	EnsemblPlants:Bra030136.1-P	EnsemblPlantsGene:Bra030136	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44679	PANTHER:PTHR44679:SF3	PFAM:PF13639	PFAM:PF14369
PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000254103D	UniProt:M4EMW6
MapMan:35.1	:	:	:	:	:

Description

AT5G64920 (E=2e-035) CIP8 | CIP8 (COP1-INTERACTING PROTEIN 8); protein binding / zinc ion binding

Coordinates

chrA07:+:6269391..6270119

Molecular Weight (calculated)

27312.0 Da

IEP (calculated)

7.482

GRAVY (calculated)

-0.647

Length

242 amino acids

Sequence
(BLAST)

001: MSDAQESYWC YRCFKHVAVR TLDDEVLCCE CNNGFVRLIQ AIPAAHSTEI EVQSYGLHQR RESNLERVIN RLWSRHEASP PNTLERVADN IGGRRGAPPA
101: AKSAVEALET FEVGSTSSEE GERTAVMCAV CKDAMVMSEI GKKLPCGHFY HDNCILPWLE TRNSCPVCRF QLPTDDLRYE RKRAREEPHL TVSAGASSVS
201: AGASSSSLMS EREENNNHHV FETRRRTSRK GRPNRYTGHF AH

Best Arabidopsis Sequence Match ( AT5G64920.1 )
(BLAST)

001: MSDAPSSSPD ATASHWCYHC NKRVVVETLD DFVVCCECNK GFVESIQPTP AAYSSPAPPQ PLSPDLNVED SSIGSHFLQM LRLLAHAPSQ RSPPRHLDVL
101: SYEDDFFRLE LNSRNEIDDD EDEDEDDGDE EEEDEEENLT VNDEEDEEDD LRRRNRFPLT TTQSRTGRNR ILDWAEILMG IEDNSIEFRM ESDRYAGNPA
201: DYIDDAAGYE ALLQNLAEGD GGGGGGRRGA PPAAKSAIEA LETFEVSSSE GEMVMVCAVC KDGMVMGETG KKLPCGHCYH GDCIVPWLGT RNSCPVCRFQ
301: LETDDAEYEE ERKKRTSTVS DSAAASSSSS TSRY

Arabidopsis Description

CIP8CIP8 [Source:UniProtKB/TrEMBL;Acc:A0A178UJC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.