Factsheet for PGSC0003DMT400081469

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400036075
PGSC0003DMT400070128

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G64920.1	PGSC0003DMT400036075	AT2G32950.1	10488108
AT5G64920.1	PGSC0003DMT400036075	AT2G32950.1	12028569
AT5G64920.1	PGSC0003DMT400036075	AT2G32950.1	12827204
AT5G64920.1	PGSC0003DMT400070128	AT3G52155.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g074460.1.1	Tomato	nucleus	94.44	94.69
KRG90607	Soybean	nucleus	55.56	62.31
KRH36150	Soybean	nucleus	54.76	62.16
VIT_18s0001g14530.t01	Wine grape	cytosol, nucleus, plastid	48.94	55.39
CDY18690	Canola	cytosol, peroxisome, plastid	40.74	51.51
CDX81263	Canola	cytosol, peroxisome, plastid	39.42	51.38
Bra037800.1-P	Field mustard	cytosol	40.74	50.99
AT5G64920.1	Thale cress	cytosol	44.44	50.3
CDY32333	Canola	cytosol	24.34	39.15
CDX94665	Canola	nucleus	23.55	37.87
Bra030136.1-P	Field mustard	cytosol	23.81	37.19
CDY68603	Canola	cytosol	23.81	37.19
PGSC0003DMT400082489	Potato	nucleus	21.69	25.47
PGSC0003DMT400046527	Potato	nucleus	21.96	23.06
PGSC0003DMT400026380	Potato	nucleus	22.22	21.71
PGSC0003DMT400058464	Potato	nucleus	18.25	21.7
PGSC0003DMT400079301	Potato	nucleus	16.67	21.0
PGSC0003DMT400005512	Potato	mitochondrion	21.43	20.98
PGSC0003DMT400069320	Potato	nucleus	21.96	20.65
PGSC0003DMT400016233	Potato	nucleus	21.43	20.56
PGSC0003DMT400002370	Potato	cytosol	16.93	19.81
PGSC0003DMT400061055	Potato	extracellular	14.81	18.79
PGSC0003DMT400063293	Potato	nucleus	21.43	18.75
PGSC0003DMT400068309	Potato	cytosol	18.78	17.84
PGSC0003DMT400003515	Potato	nucleus	17.46	17.79
PGSC0003DMT400071362	Potato	nucleus	19.05	15.22

Protein Annotations

EntrezGene:102583669	Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0019538	InterPro:IPR001841	InterPro:IPR013083	UniProt:M1D4V0	PFAM:PF13639	PFAM:PF14369
EnsemblPlantsGene:PGSC0003DMG400031865	PGSC:PGSC0003DMG400031865	EnsemblPlants:PGSC0003DMT400081469	PFscan:PS50089	PANTHER:PTHR44679	SMART:SM00184
SUPFAM:SSF57850	UniParc:UPI0002958769	RefSeq:XP_015169891.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400031865]

Coordinates

chr9:+:51887517..51888925

Molecular Weight (calculated)

41422.5 Da

IEP (calculated)

3.832

GRAVY (calculated)

-0.799

Length

378 amino acids

Sequence
(BLAST)

001: MAETPSVPAP TGSDPDYWCY QCETRVAVET LPDLPADVIC SNCKSGFVES IPSRVVSVSP VTASTDQIDD PAFGNQFIQV LRLIAEAARD NDAPPPPPSE
101: HADPTDDDFL RVELDGWGND DDEDDDNEEE DNEIGVRIGD DGENRGNRSQ SEDDDDDDDD DDVDEDEEVE NRDDDEEDLR RRRRDVLRLR LRDFAARAAN
201: RRNRILDWAE ILMGLEDHSI ELRFQVPDGD GYIGNPGDYV DAAGYEALLQ TLAESDGSGR RGAPPASKSA IEGLNTLVIK EEQEVMACAI CKDVVNVGEM
301: AKNLPCGHGY HDDCIVQWLG SRNSCPVCRF ELPTDDPEYE EERKKRGACV TSSGSSSSSE APGAAAADDD DDSSPSCL

Best Arabidopsis Sequence Match ( AT5G64920.1 )
(BLAST)

001: MSDAPSSSPD ATASHWCYHC NKRVVVETLD DFVVCCECNK GFVESIQPTP AAYSSPAPPQ PLSPDLNVED SSIGSHFLQM LRLLAHAPSQ RSPPRHLDVL
101: SYEDDFFRLE LNSRNEIDDD EDEDEDDGDE EEEDEEENLT VNDEEDEEDD LRRRNRFPLT TTQSRTGRNR ILDWAEILMG IEDNSIEFRM ESDRYAGNPA
201: DYIDDAAGYE ALLQNLAEGD GGGGGGRRGA PPAAKSAIEA LETFEVSSSE GEMVMVCAVC KDGMVMGETG KKLPCGHCYH GDCIVPWLGT RNSCPVCRFQ
301: LETDDAEYEE ERKKRTSTVS DSAAASSSSS TSRY

Arabidopsis Description

CIP8CIP8 [Source:UniProtKB/TrEMBL;Acc:A0A178UJC6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.