Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400026380 | Potato | nucleus | 44.53 | 46.25 |
| KRH09399 | Soybean | nucleus | 37.56 | 40.92 |
| KRH38895 | Soybean | nucleus | 38.06 | 40.69 |
| VIT_17s0053g00320.t01 | Wine grape | plastid | 36.82 | 40.11 |
| PGSC0003DMT400082489 | Potato | nucleus | 28.86 | 36.02 |
| PGSC0003DMT400058464 | Potato | nucleus | 22.14 | 27.99 |
| PGSC0003DMT400079301 | Potato | nucleus | 18.41 | 24.67 |
| PGSC0003DMT400046527 | Potato | nucleus | 20.15 | 22.5 |
| PGSC0003DMT400002370 | Potato | cytosol | 17.66 | 21.98 |
| PGSC0003DMT400081469 | Potato | nucleus | 20.65 | 21.96 |
| PGSC0003DMT400005512 | Potato | mitochondrion | 20.15 | 20.98 |
| PGSC0003DMT400016233 | Potato | nucleus | 20.4 | 20.81 |
| PGSC0003DMT400061055 | Potato | extracellular | 14.68 | 19.8 |
| PGSC0003DMT400003515 | Potato | nucleus | 14.93 | 16.17 |
| PGSC0003DMT400068309 | Potato | cytosol | 14.93 | 15.08 |
| PGSC0003DMT400071362 | Potato | nucleus | 17.66 | 15.01 |
| PGSC0003DMT400063293 | Potato | nucleus | 14.68 | 13.66 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400069320 | EnsemblPlantsGene:PGSC0003DMG400026965 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44679 | PANTHER:PTHR44679:SF3 | PFAM:PF13639 | PFAM:PF14369 | PFscan:PS50089 |
| PGSC:PGSC0003DMG400026965 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0002954E7C | UniProt:M1CKA3 |
| MapMan:35.1 | : | : | : | : | : |
Description
Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026965]
Coordinates
chr6:-:53020891..53022574
Molecular Weight (calculated)
42199.0 Da
IEP (calculated)
3.934
GRAVY (calculated)
-0.615
Length
402 amino acids
Sequence
(BLAST)
(BLAST)
001: MAENSPQNYY CYGCESTVSL TPLPNSELSC PNCNGTFLEE SQTVPPPDPV TGENPFGDDS SFTFPTDSGN GGGDELPALF DGGALFGQSP VELDPVTFIN
101: SYLRDGDATI QLLVENNLIR GGGSENGLPE NFGDYFVGPD LEQLIHQLAE SDLNMFGTPP AAKSAVSGLP DVKVSDELLN SDLSQCAVCK DGFKLDELVK
201: QMPCKHMYHD GCLLPWLEMR NSCPVCRFEL PTDDSDYENM RSNNDNNGGL FSLGSEGGGN QGNARTVDSN GGLFSLGSEG GENQGNARTV ESNAGLFSLG
301: SEGGGNQGNR RTVESYAGLF SLGAEGGGNQ GNPRTVERRV RISLPGLLRG LQSHAETSNS TGGGGSNDGV NNDGNSSGSG DTHGEPNPCP RGQGQANQED
401: LD
101: SYLRDGDATI QLLVENNLIR GGGSENGLPE NFGDYFVGPD LEQLIHQLAE SDLNMFGTPP AAKSAVSGLP DVKVSDELLN SDLSQCAVCK DGFKLDELVK
201: QMPCKHMYHD GCLLPWLEMR NSCPVCRFEL PTDDSDYENM RSNNDNNGGL FSLGSEGGGN QGNARTVDSN GGLFSLGSEG GENQGNARTV ESNAGLFSLG
301: SEGGGNQGNR RTVESYAGLF SLGAEGGGNQ GNPRTVERRV RISLPGLLRG LQSHAETSNS TGGGGSNDGV NNDGNSSGSG DTHGEPNPCP RGQGQANQED
401: LD
001: MGFSPKSVII VSELESATYD ITENYFSLSS DGSFLPSSSR FFCFVVSLSR SEKFAESVMS SGVNSTGSAA AAPEVDKMFF CYQCNQTVTI SISSSADPFC
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQQ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.