Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g065650.1.1 | Tomato | cytosol, nucleus, plastid | 92.46 | 92.7 |
| PGSC0003DMT400003515 | Potato | nucleus | 45.48 | 48.79 |
| VIT_14s0083g00710.t01 | Wine grape | nucleus | 40.7 | 41.43 |
| Os06t0633500-01 | Rice | cytosol, nucleus | 12.31 | 39.52 |
| KRG93748 | Soybean | nucleus, plastid | 36.43 | 38.16 |
| KRH18313 | Soybean | nucleus | 35.68 | 37.97 |
| GSMUA_Achr8P24510_001 | Banana | cytosol | 30.9 | 31.06 |
| AT3G02340.2 | Thale cress | cytosol | 28.39 | 27.63 |
| CDY34722 | Canola | cytosol | 25.13 | 25.64 |
| Bra021467.1-P | Field mustard | nucleus | 24.87 | 25.38 |
| CDY34721 | Canola | cytosol | 24.87 | 25.38 |
| PGSC0003DMT400063293 | Potato | nucleus | 27.39 | 25.23 |
| AT5G15820.1 | Thale cress | cytosol | 21.86 | 25.0 |
| TraesCS6A01G288800.1 | Wheat | cytosol, plastid | 18.59 | 24.1 |
| GSMUA_Achr3P06300_001 | Banana | cytosol | 31.41 | 23.95 |
| CDX85531 | Canola | cytosol | 20.6 | 23.91 |
| TraesCS6B01G318600.1 | Wheat | cytosol, plastid | 18.34 | 23.78 |
| Bra008671.1-P | Field mustard | nucleus | 17.09 | 23.69 |
| CDX90972 | Canola | cytosol | 19.85 | 23.58 |
| Os02t0727700-01 | Rice | cytosol, nucleus, plastid | 18.34 | 23.47 |
| CDX69496 | Canola | cytosol | 16.83 | 23.26 |
| Bra023539.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 23.12 | 23.17 |
| OQU85475 | Sorghum | cytosol | 18.59 | 23.12 |
| Zm00001d051736_P001 | Maize | cytosol | 18.59 | 22.42 |
| CDY26465 | Canola | cytosol | 19.1 | 22.42 |
| Os08t0487500-01 | Rice | plastid | 15.08 | 22.14 |
| TraesCS7B01G144100.1 | Wheat | plastid | 14.32 | 21.19 |
| TraesCS7D01G246300.1 | Wheat | plastid | 14.07 | 20.82 |
| TraesCS7A01G247700.1 | Wheat | cytosol, plastid | 13.82 | 20.45 |
| Zm00001d046663_P001 | Maize | cytosol | 14.82 | 19.8 |
| HORVU6Hr1G072430.1 | Barley | cytosol | 18.09 | 19.78 |
| Zm00001d031273_P001 | Maize | cytosol, plastid | 14.07 | 19.38 |
| PGSC0003DMT400081469 | Potato | nucleus | 17.84 | 18.78 |
| EER90075 | Sorghum | nucleus | 14.07 | 18.48 |
| EES14331 | Sorghum | plastid | 13.57 | 18.43 |
| Zm00001d053704_P001 | Maize | cytosol | 15.83 | 17.7 |
| OQU84547 | Sorghum | cytoskeleton, cytosol, nucleus | 16.83 | 17.31 |
| TraesCS7A01G391700.1 | Wheat | cytosol | 14.07 | 16.92 |
| TraesCS7D01G387300.1 | Wheat | cytosol | 13.82 | 16.87 |
| Os02t0191500-01 | Rice | nucleus | 15.83 | 16.8 |
| PGSC0003DMT400061055 | Potato | extracellular | 12.56 | 16.78 |
| TraesCS7B01G293600.1 | Wheat | cytosol | 13.82 | 16.67 |
| HORVU6Hr1G034800.1 | Barley | cytosol, nucleus | 14.57 | 15.68 |
| PGSC0003DMT400082489 | Potato | nucleus | 12.56 | 15.53 |
| TraesCS6D01G160300.1 | Wheat | nucleus | 13.57 | 15.52 |
| PGSC0003DMT400079301 | Potato | nucleus | 11.56 | 15.33 |
| HORVU7Hr1G092570.1 | Barley | cytosol | 14.57 | 15.14 |
| PGSC0003DMT400046527 | Potato | nucleus | 13.57 | 15.0 |
| PGSC0003DMT400069320 | Potato | nucleus | 15.08 | 14.93 |
| PGSC0003DMT400005512 | Potato | mitochondrion | 13.82 | 14.25 |
| PGSC0003DMT400071362 | Potato | nucleus | 16.83 | 14.16 |
| PGSC0003DMT400058464 | Potato | nucleus | 11.31 | 14.15 |
| TraesCS6B01G198800.1 | Wheat | nucleus | 14.07 | 13.97 |
| PGSC0003DMT400016233 | Potato | nucleus | 13.82 | 13.96 |
| PGSC0003DMT400026380 | Potato | nucleus | 12.81 | 13.18 |
| PGSC0003DMT400002370 | Potato | cytosol | 8.79 | 10.84 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400068309 | EnsemblPlantsGene:PGSC0003DMG400026558 | EntrezGene:102596873 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44679 | PFAM:PF13639 | PFscan:PS50089 | PGSC:PGSC0003DMG400026558 |
| RefSeq:XP_006365648.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00029665C3 | UniProt:M1CIU0 |
| MapMan:35.1 | : | : | : | : | : |
Description
Zinc finger protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026558]
Coordinates
chr2:-:24881974..24883618
Molecular Weight (calculated)
44086.7 Da
IEP (calculated)
3.807
GRAVY (calculated)
-0.524
Length
398 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEVSGIHRF HLPQTIYATV TDDDDDDEEY SHPFAFDFDS LSPPNHTLFI HSHDFNYSPN SEPEPGSLDS DSGSDHSGLL ADPDSFIVDD DQMNFVTDLF
101: VTPDGNVSED SGFDNGNRVV LEDVYGDFGS DFDGVLLPSD SNGLDTGDGI RVVGIGSDSD SQEVELNVGD INQANGFWNC LRIDDERDVN DEFEWEEVNE
201: RGEDRDYLSS VIDGIEEISV SSDISSSEGG NSNSGSVDEP VRSLEWEVLL AVDNIERSLE LDGNDDGISH VNETDHDALF GQFLESEGTL KGSPPTAKSV
301: IENLPSVALK DEVNKIACAV CKDEILVVEK VTELPCSHYY HWECIIPWLN IRNTCPVCRH ELPTDDTDYE RRKIGRRTGA GAQLISDFQV RYNFEIVP
101: VTPDGNVSED SGFDNGNRVV LEDVYGDFGS DFDGVLLPSD SNGLDTGDGI RVVGIGSDSD SQEVELNVGD INQANGFWNC LRIDDERDVN DEFEWEEVNE
201: RGEDRDYLSS VIDGIEEISV SSDISSSEGG NSNSGSVDEP VRSLEWEVLL AVDNIERSLE LDGNDDGISH VNETDHDALF GQFLESEGTL KGSPPTAKSV
301: IENLPSVALK DEVNKIACAV CKDEILVVEK VTELPCSHYY HWECIIPWLN IRNTCPVCRH ELPTDDTDYE RRKIGRRTGA GAQLISDFQV RYNFEIVP
001: MDDLLHQRVE QSQVTPPHDD SNIHGDFDNE ATDESRSETC SVVIEGNCDM VIELGLESGS VIVENLGDSD IDVSNDFDEP DDDDFFVGRT DFGLEFRDIA
101: SSGNDIRLIT VESGSDDDDG VENERELWGI DLNEEDVYVN DDDEYEDDDV SVTIPLCWDS LQLEDREVTA DEFDWEEVGG GGGGGVDDER EIRSGFAQID
201: MNDESLISAS PIISLEGLVT RERAEGSGNL GWEVLLNHTL EINFDVDNRE LYIGGDHDDY VQDYDMLFEQ FADAEVSVIG LPPTSKSFLN NLPVVLLEGE
301: NDDDGGLVCA VCKDEMNIGN KAVQLPCNHK YHSECIVPWL KVRNTCPVCR YELPTDDAEY EQRKTQRTTN TFGMVL
101: SSGNDIRLIT VESGSDDDDG VENERELWGI DLNEEDVYVN DDDEYEDDDV SVTIPLCWDS LQLEDREVTA DEFDWEEVGG GGGGGVDDER EIRSGFAQID
201: MNDESLISAS PIISLEGLVT RERAEGSGNL GWEVLLNHTL EINFDVDNRE LYIGGDHDDY VQDYDMLFEQ FADAEVSVIG LPPTSKSFLN NLPVVLLEGE
301: NDDDGGLVCA VCKDEMNIGN KAVQLPCNHK YHSECIVPWL KVRNTCPVCR YELPTDDAEY EQRKTQRTTN TFGMVL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GYG0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.