Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G160300.1 | Wheat | nucleus | 73.78 | 78.45 |
| TraesCS6B01G198800.1 | Wheat | nucleus | 74.86 | 69.08 |
| HORVU7Hr1G055010.1 | Barley | cytosol | 13.24 | 22.17 |
| Os02t0191500-01 | Rice | nucleus | 21.35 | 21.07 |
| HORVU6Hr1G072430.1 | Barley | cytosol | 20.54 | 20.88 |
| HORVU3Hr1G096110.1 | Barley | mitochondrion | 16.22 | 20.76 |
| OQU84547 | Sorghum | cytoskeleton, cytosol, nucleus | 21.08 | 20.16 |
| Zm00001d053704_P001 | Maize | cytosol | 19.19 | 19.94 |
| Bra008671.1-P | Field mustard | nucleus | 14.86 | 19.16 |
| CDX69496 | Canola | cytosol | 14.86 | 19.1 |
| HORVU7Hr1G000850.1 | Barley | cytosol, mitochondrion, nucleus | 18.11 | 18.77 |
| CDX78323 | Canola | cytosol | 14.59 | 18.75 |
| Bra005970.1-P | Field mustard | cytosol | 14.05 | 17.93 |
| CDY69134 | Canola | cytosol | 14.05 | 17.87 |
| HORVU4Hr1G051610.2 | Barley | cytosol | 16.49 | 17.68 |
| HORVU1Hr1G004330.14 | Barley | cytosol | 18.65 | 17.21 |
| HORVU1Hr1G043220.1 | Barley | cytosol, mitochondrion, plastid, vacuole | 17.03 | 17.17 |
| CDY26465 | Canola | cytosol | 15.41 | 16.81 |
| HORVU4Hr1G060130.1 | Barley | cytosol | 15.95 | 16.76 |
| HORVU3Hr1G041030.1 | Barley | mitochondrion | 17.3 | 16.54 |
| GSMUA_Achr8P24510_001 | Banana | cytosol | 17.57 | 16.41 |
| HORVU0Hr1G019650.1 | Barley | mitochondrion | 14.05 | 16.4 |
| KRH56750 | Soybean | cytosol | 14.86 | 16.08 |
| KRH03189 | Soybean | nucleus | 15.41 | 16.06 |
| Solyc02g089410.2.1 | Tomato | nucleus | 14.05 | 15.9 |
| HORVU7Hr1G092570.1 | Barley | cytosol | 16.22 | 15.67 |
| HORVU1Hr1G068950.2 | Barley | golgi | 16.22 | 15.54 |
| HORVU3Hr1G039220.1 | Barley | cytosol | 15.68 | 15.38 |
| VIT_14s0083g00710.t01 | Wine grape | nucleus | 16.22 | 15.35 |
| HORVU6Hr1G080320.2 | Barley | cytosol, mitochondrion | 13.78 | 15.32 |
| KRH18313 | Soybean | nucleus | 15.41 | 15.24 |
| AT5G15820.1 | Thale cress | cytosol | 14.32 | 15.23 |
| Solyc02g065650.1.1 | Tomato | cytosol, nucleus, plastid | 16.22 | 15.11 |
| VIT_17s0000g04730.t01 | Wine grape | nucleus | 17.84 | 15.03 |
| CDY21513 | Canola | cytosol | 14.32 | 14.89 |
| CDY34722 | Canola | cytosol | 15.68 | 14.87 |
| KRG93748 | Soybean | nucleus, plastid | 15.14 | 14.74 |
| CDX69973 | Canola | cytosol | 14.32 | 14.72 |
| CDY34721 | Canola | cytosol | 15.41 | 14.62 |
| PGSC0003DMT400068309 | Potato | cytosol | 15.68 | 14.57 |
| PGSC0003DMT400003515 | Potato | nucleus | 14.59 | 14.56 |
| HORVU3Hr1G115000.7 | Barley | mitochondrion | 15.41 | 14.54 |
| Bra021467.1-P | Field mustard | nucleus | 15.14 | 14.36 |
| PGSC0003DMT400063293 | Potato | nucleus | 16.76 | 14.35 |
| AT5G08139.1 | Thale cress | cytosol | 14.32 | 14.1 |
| Bra009323.1-P | Field mustard | cytosol | 14.32 | 13.98 |
| HORVU5Hr1G111530.1 | Barley | nucleus | 14.86 | 13.82 |
| CDX85531 | Canola | cytosol | 12.7 | 13.7 |
| CDY02194 | Canola | peroxisome | 14.32 | 13.32 |
| CDX90972 | Canola | cytosol | 11.89 | 13.13 |
| CDY51628 | Canola | peroxisome | 14.32 | 13.05 |
| AT5G60820.1 | Thale cress | cytosol | 14.59 | 12.89 |
| Solyc03g114680.2.1 | Tomato | nucleus | 17.3 | 12.85 |
| AT3G02340.2 | Thale cress | cytosol | 14.05 | 12.71 |
| Bra013006.1-P | Field mustard | nucleus | 14.32 | 12.71 |
| Bra023539.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 12.97 | 12.09 |
| GSMUA_Achr3P06300_001 | Banana | cytosol | 16.49 | 11.69 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G034800.1 | EnsemblPlantsGene:HORVU6Hr1G034800 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44679 | PANTHER:PTHR44679:SF3 | PFAM:PF13639 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000B47DB8A | UniProt:A0A287TWE3 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chrchr6H:+:165295756..165300496
Molecular Weight (calculated)
40041.5 Da
IEP (calculated)
3.498
GRAVY (calculated)
-0.885
Length
370 amino acids
Sequence
(BLAST)
(BLAST)
001: ETGTPIRAAS PSYSMADDSD GEEFCADPFE DDSDGGDSCH YRCCYDDDDE GEWSCGAPCD DDDDASNGEE ICRDPCDEAV LVDDDDEGEV EDALCHDDDD
101: DEVESDGSLS DEDAEDEELS DEDAEGEELS DNDECEGRSG EFVDDLCDDE DKGEADGESE DFYENPSNHD EDVGPEVLCC GDGSCVSGFC LFDDSDISDS
201: DHPASEVDEA GGFNRGREGL TQSGFDGTPS PGAFRMVVGA EDSDSDTYST GSEYEDDYEF RNRPASRQAV EGLPEMILSE EEATCGCAVC KDVFALGQCV
301: VFLPCKHYFH GDCIRPWLAM RSTCPVCRYQ LPTDDTQSGQ GQAHRLRVLL PVDRQGASQQ SGDGATTGRD
101: DEVESDGSLS DEDAEDEELS DEDAEGEELS DNDECEGRSG EFVDDLCDDE DKGEADGESE DFYENPSNHD EDVGPEVLCC GDGSCVSGFC LFDDSDISDS
201: DHPASEVDEA GGFNRGREGL TQSGFDGTPS PGAFRMVVGA EDSDSDTYST GSEYEDDYEF RNRPASRQAV EGLPEMILSE EEATCGCAVC KDVFALGQCV
301: VFLPCKHYFH GDCIRPWLAM RSTCPVCRYQ LPTDDTQSGQ GQAHRLRVLL PVDRQGASQQ SGDGATTGRD
001: MSSAKLFGCS INVNVEAEEE EGGDGGSSTN VEVSRSGNQP DCEAMSFSNQ MEIGVRNTYY QFLESNSDSG SDSMYAEPEF IDFFDRESYE VDTVREVCVS
101: SNQRVSTPGY FNIWDQDVDL GLGIGLGSRS GSGQLPGDSG GVGVEVGRGV TPVEYNLFGE EAMVVDEVLE WENFNNAIHL VQEPAYASME GEEEEEEDEV
201: VMEFAASIYS DAWEILLYDN MTNSAPMDLD VEVWLDSVDG YAPMDYNAII GQMFDNETGI KGTPPASKSV VDGLPDVELT IEELSSVSIV CAICKDEVVF
301: KEKVKRLPCK HYYHGECIIP WLGIRNTCPV CRHELPTDDL EYERKRRA
101: SNQRVSTPGY FNIWDQDVDL GLGIGLGSRS GSGQLPGDSG GVGVEVGRGV TPVEYNLFGE EAMVVDEVLE WENFNNAIHL VQEPAYASME GEEEEEEDEV
201: VMEFAASIYS DAWEILLYDN MTNSAPMDLD VEVWLDSVDG YAPMDYNAII GQMFDNETGI KGTPPASKSV VDGLPDVELT IEELSSVSIV CAICKDEVVF
301: KEKVKRLPCK HYYHGECIIP WLGIRNTCPV CRHELPTDDL EYERKRRA
Arabidopsis Description
AT5g15820/F14F8_200 [Source:UniProtKB/TrEMBL;Acc:Q9LFU4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.