Factsheet for HORVU1Hr1G043220.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, vacuole, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
mitochondrion 3
cytosol 1
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid, vacuole
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G179000.1	Wheat	cytosol, mitochondrion, plastid, vacuole	96.46	95.94
TraesCS1D01G159200.1	Wheat	cytosol, mitochondrion, plastid, vacuole	96.46	95.68
TraesCS1A01G162400.1	Wheat	cytosol, mitochondrion, plastid, vacuole	96.46	95.68
Os10t0487400-01	Rice	mitochondrion, nucleus, plastid, vacuole	75.48	74.86
Zm00001d013971_P001	Maize	cytosol, mitochondrion, plastid, vacuole	76.29	72.73
Zm00001d032646_P001	Maize	cytosol	70.03	68.53
GSMUA_Achr5P19380_001	Banana	plastid	23.98	46.07
HORVU7Hr1G000850.1	Barley	cytosol, mitochondrion, nucleus	35.42	36.41
HORVU3Hr1G096110.1	Barley	mitochondrion	23.71	30.1
HORVU0Hr1G019650.1	Barley	mitochondrion	23.43	27.13
HORVU7Hr1G055010.1	Barley	cytosol	16.08	26.7
HORVU1Hr1G004330.14	Barley	cytosol	27.79	25.44
HORVU6Hr1G080320.2	Barley	cytosol, mitochondrion	22.89	25.23
HORVU4Hr1G051610.2	Barley	cytosol	22.62	24.06
HORVU3Hr1G039220.1	Barley	cytosol	24.52	23.87
HORVU4Hr1G060130.1	Barley	cytosol	22.07	23.01
HORVU1Hr1G068950.2	Barley	golgi	23.71	22.54
HORVU3Hr1G115000.7	Barley	mitochondrion	22.89	21.43
HORVU5Hr1G111530.1	Barley	nucleus	23.16	21.36
HORVU3Hr1G041030.1	Barley	mitochondrion	22.34	21.19
HORVU6Hr1G072430.1	Barley	cytosol	20.71	20.88
HORVU7Hr1G092570.1	Barley	cytosol	19.89	19.06
HORVU6Hr1G034800.1	Barley	cytosol, nucleus	17.17	17.03

Protein Annotations

EnsemblPlants:HORVU1Hr1G043220.1	EnsemblPlantsGene:HORVU1Hr1G043220	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR44679	PANTHER:PTHR44679:SF2	PFAM:PF13639	PFAM:PF14369
PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000295753E	UniProt:M0X3E4
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chrchr1H:+:314033130..314035664

Molecular Weight (calculated)

37892.7 Da

IEP (calculated)

4.164

GRAVY (calculated)

-0.283

Length

367 amino acids

Sequence
(BLAST)

001: MSTPGAAYYA SLARKQYFCY QCNRTVLIAA SAAAAGELSC PECRGDFLEE VTVPAPTILP FPFAFPPMMP TASSPSRSSS SSTAAPPSSD LSNFLTSILD
101: LQEGRRVRSR SGSGAASAAG TATPENEPES FDPLVFFQNY IHTLMEGGAN VQVLLDDASV NLAPGLGGRT GGASYGDYFV GPGLEQLIEQ LAENDPNRYG
201: TPPAAKSALS TLPDVVVTDA MVAAAEGAEC AVCKEDFSPG DGAKQMPCKH IYHADCIVPW LELHNSCPIC RFELPTDDPD YEGIKASNPQ SSVGGGGAAA
301: SGSSGVAEEG GEESGERVVE RRFNVSLPWP FGGLAGQTPQ QDGNNAGAGS SSQDSGSQDG AGGSNKN

Best Arabidopsis Sequence Match ( AT3G19950.2 )
(BLAST)

001: MGFSPKSVII VSELESATYD ITENYFSLSS DGSFLPSSSR FFCFVVSLSR SEKFAESVMS SGVNSTGSAA AAPEVDKMFF CYQCNQTVTI SISSSADPFC
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.