Factsheet for HORVU3Hr1G039220.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G189200.1	Wheat	cytosol	93.9	94.4
TraesCS3B01G218400.1	Wheat	cytosol	92.57	93.82
TraesCS3D01G192700.1	Wheat	cytosol	91.51	93.75
Zm00001d008237_P001	Maize	nucleus	55.7	60.17
Zm00001d040445_P001	Maize	nucleus	55.17	60.12
EES00577	Sorghum	nucleus	54.91	57.66
Os01t0276600-01	Rice	nucleus	46.15	52.89
GSMUA_Achr5P07680_001	Banana	nucleus	30.77	38.93
GSMUA_Achr6P08590_001	Banana	nucleus	30.24	38.91
GSMUA_Achr7P18340_001	Banana	nucleus	30.5	38.33
GSMUA_Achr9P05060_001	Banana	nucleus	17.77	36.02
HORVU4Hr1G051610.2	Barley	cytosol	32.63	35.65
GSMUA_Achr10P...	Banana	nucleus	27.06	33.66
HORVU5Hr1G111530.1	Barley	nucleus	31.83	30.15
HORVU1Hr1G068950.2	Barley	golgi	27.59	26.94
HORVU3Hr1G096110.1	Barley	mitochondrion	20.42	26.64
HORVU1Hr1G043220.1	Barley	cytosol, mitochondrion, plastid, vacuole	23.87	24.52
HORVU7Hr1G000850.1	Barley	cytosol, mitochondrion, nucleus	23.08	24.37
HORVU0Hr1G019650.1	Barley	mitochondrion	19.63	23.34
HORVU7Hr1G055010.1	Barley	cytosol	13.53	23.08
HORVU6Hr1G080320.2	Barley	cytosol, mitochondrion	18.83	21.32
HORVU1Hr1G004330.14	Barley	cytosol	21.49	20.2
HORVU3Hr1G115000.7	Barley	mitochondrion	19.36	18.62
HORVU4Hr1G060130.1	Barley	cytosol	17.24	18.47
HORVU6Hr1G072430.1	Barley	cytosol	16.98	17.58
HORVU3Hr1G041030.1	Barley	mitochondrion	18.04	17.57
HORVU6Hr1G034800.1	Barley	cytosol, nucleus	15.38	15.68
HORVU7Hr1G092570.1	Barley	cytosol	13.79	13.58

Protein Annotations

EMBL:AK359867	EnsemblPlants:HORVU3Hr1G039220.1	EnsemblPlantsGene:HORVU3Hr1G039220	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44576	PANTHER:PTHR44576:SF5	PFAM:PF13639	PFAM:PF14369
PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00020058A0	UniProt:F2D7K5
MapMan:35.1	:	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D7K5]

Coordinates

chrchr3H:+:231376289..231379507

Molecular Weight (calculated)

39943.1 Da

IEP (calculated)

4.593

GRAVY (calculated)

-0.373

Length

377 amino acids

Sequence
(BLAST)

001: MGELVVARRY WCHMCATAVS PVVAEAGVEI KCPYCGSGFL EEMETARSSV AAGTGHASGT YPSADNAISI WAPIIDSMVG DPVRRRRSNR RTVDAVAAAE
101: DELDNVDFSR RRRRATAFLR LLQAIRERQL QRLESAAALG AGGGLEAEHY SPFGRSIFAA APLGEHGMAL GDYFLGPGLD ALMQQLADSD AGRQGTPPAK
201: KDAVEALPTV EVVGCGNEED AASCAVCLED YASGERAREL PCRHRFHSQC IVPWLEMHSS CPVCRFQLPA DDDPKSSCGS GSGSGSVSTT TTTYVTYVSG
301: EVNDNVDDHG NESGDGRDEA EGNAAVERQD GDVGAEGNVS RLPASIQWLN SLFSPQGTSP SSTSTSTSGG SSRHFED

Best Arabidopsis Sequence Match ( AT1G55530.1 )
(BLAST)

001: MEEAVVTRYW CHMCSQTVNP VMEAEIKCPF CQSGFVEEME DDDDHDSSDP ADVRANNSLW APILMELMND PVRRRRNQSV ESVEDNQNEV QTENNEDDGE
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S

Arabidopsis Description

At1g55530/T5A14_7 [Source:UniProtKB/TrEMBL;Acc:Q9ZVU8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.