CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040445_P001	Maize	nucleus	88.86	92.2
TraesCS3D01G192700.1	Wheat	cytosol	57.1	55.71
TraesCS3A01G189200.1	Wheat	cytosol	57.66	55.2
TraesCS3B01G218400.1	Wheat	cytosol	57.1	55.11
HORVU3Hr1G039220.1	Barley	cytosol	57.66	54.91
Os01t0276600-01	Rice	nucleus	45.4	49.54
GSMUA_Achr9P05060_001	Banana	nucleus	20.61	39.78
KXG39475	Sorghum	cytosol	35.1	39.25
GSMUA_Achr7P18340_001	Banana	nucleus	32.59	39.0
GSMUA_Achr5P07680_001	Banana	nucleus	32.31	38.93
GSMUA_Achr6P08590_001	Banana	nucleus	31.48	38.57
GSMUA_Achr10P...	Banana	nucleus	30.08	35.64
KXG37275	Sorghum	nucleus	33.7	31.59
EER92269	Sorghum	nucleus	23.12	29.12
KXG22238	Sorghum	plastid	28.13	25.96
EER89027	Sorghum	nucleus	23.12	25.86
EER95109	Sorghum	plastid	18.38	24.0
KXG33564	Sorghum	mitochondrion	19.5	23.18
EER89401	Sorghum	mitochondrion, nucleus	19.5	20.96
EES14331	Sorghum	plastid	16.43	20.14
EES17560	Sorghum	plastid	22.56	19.61
OQU85475	Sorghum	cytosol	16.99	19.06
KXG31176	Sorghum	plastid	18.38	18.54
EER90075	Sorghum	nucleus	14.21	16.83
OQU84547	Sorghum	cytoskeleton, cytosol, nucleus	16.99	15.76

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:8074536	UniProt:C5XH92	EnsemblPlants:EES00577	ProteinID:EES00577
ProteinID:EES00577.1	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0042787
GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF13639	PFAM:PF14369
PFscan:PS50089	PANTHER:PTHR44576	PANTHER:PTHR44576:SF5	SMART:SM00184	EnsemblPlantsGene:SORBI_3003G130700	SUPFAM:SSF57850
unigene:Sbi.9893	UniParc:UPI0001A84366	RefSeq:XP_002455457.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

hypothetical protein

Coordinates

chr3:+:12237226..12239552

Molecular Weight (calculated)

38075.8 Da

IEP (calculated)

4.631

GRAVY (calculated)

-0.494

Length

359 amino acids

Sequence
(BLAST)

001: MAEQASAGRY WCHMCAAVVS PAEGEAEMKC PLCHSGFLEE METARGAAVA AVATDDGDGD GTVAQVYSGG ADRPSSIWAH AILSTVDSSV RRRRNRRQQE
101: AAGDVYDWND PEFSLRRRRV TAFLRLLHEL RDRQLQRLEA AAGVALEGDQ LTPFGRSLFI GAAGGGGGSE HGVALGDYFL GPSLDALVQQ LAENDAGRQG
201: TPPAKKEAVE AMPIVEIPSG NDDDTASCPV CLEDYAAGER AREMPCRHRF HANCIVPWLE MHSSCPVCRF QLPATDDKSS CSSGNGGGFV SVDADREGND
301: DGGGDGTGRA TSPPGNAEPA EAEESGRRLP PSLQWLNSLF SPSAQSSGSG SSSSHHWEN

Best Arabidopsis Sequence Match ( AT1G55530.2 )
(BLAST)

001: MEEAVVTRYW CHMCSQTVNP VMEAEIKCPF CQSGFVEEME DDDDHDSSDP ADVRANNSLW APILMELMND PVRRRRNQSV ESVEDNQNEV QTENNEDDGE
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S

Arabidopsis Description

At1g55530/T5A14_7 [Source:UniProtKB/TrEMBL;Acc:Q9ZVU8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.