Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d043183_P001 | Maize | plastid | 89.07 | 82.77 |
| Zm00001d012564_P001 | Maize | mitochondrion | 84.11 | 73.41 |
| Os01t0802000-01 | Rice | nucleus | 63.24 | 58.05 |
| TraesCS3D01G324300.1 | Wheat | mitochondrion | 63.58 | 56.14 |
| TraesCS3B01G361000.1 | Wheat | cytosol | 62.91 | 55.39 |
| TraesCS3A01G330900.1 | Wheat | mitochondrion | 62.91 | 47.15 |
| EER92269 | Sorghum | nucleus | 41.72 | 44.21 |
| EER95109 | Sorghum | plastid | 23.51 | 25.82 |
| EER89027 | Sorghum | nucleus | 25.5 | 23.99 |
| EER89401 | Sorghum | mitochondrion, nucleus | 24.17 | 21.86 |
| KXG39475 | Sorghum | cytosol | 22.19 | 20.87 |
| KXG31176 | Sorghum | plastid | 24.5 | 20.79 |
| EES00577 | Sorghum | nucleus | 23.18 | 19.5 |
| EES17560 | Sorghum | plastid | 25.83 | 18.89 |
| KXG37275 | Sorghum | nucleus | 21.52 | 16.97 |
| EER90075 | Sorghum | nucleus | 16.89 | 16.83 |
| KXG22238 | Sorghum | plastid | 21.52 | 16.71 |
| OQU85475 | Sorghum | cytosol | 17.55 | 16.56 |
| EES14331 | Sorghum | plastid | 14.24 | 14.68 |
| OQU84547 | Sorghum | cytoskeleton, cytosol, nucleus | 16.23 | 12.66 |
Protein Annotations
| EnsemblPlants:KXG33564 | EnsemblPlantsGene:SORBI_3003G327100 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44290 | PANTHER:PTHR44290:SF2 | PFAM:PF13639 | PFAM:PF14369 | PFscan:PS50089 |
| ProteinID:KXG33564 | ProteinID:KXG33564.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00081AB98F |
| UniProt:A0A1B6Q6L7 | MapMan:35.1 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:+:65283066..65287646
Molecular Weight (calculated)
33640.8 Da
IEP (calculated)
8.108
GRAVY (calculated)
-0.569
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNRATHWCY ACRRPIRLRG QDIICPNCND GFIQKISEMG GRLNTYGLIE PDFEERRARR FGMMDAMSSL MRQRMEEMVE DSLFDIHGRQ GAGTEYRRRP
101: TAVPTLVFGG IPSPGVGSSD VNVVLRGGRR VGTAHPNFRS LVVGPSLEAL FGQLFIQNNR QGPAPAPQSA IDSMPVVKIN RRHLDDDPQC AVCKDKFELG
201: AEAREMPCKH LYHTDCIIPW LVQHNSCPVC RHPLPSQRSG STSTPRAPSA YYNEAADAPE VTRTDLDPAP RNSGSESQER HSSFSFLWPF GPSGSSSSPY
301: QY
101: TAVPTLVFGG IPSPGVGSSD VNVVLRGGRR VGTAHPNFRS LVVGPSLEAL FGQLFIQNNR QGPAPAPQSA IDSMPVVKIN RRHLDDDPQC AVCKDKFELG
201: AEAREMPCKH LYHTDCIIPW LVQHNSCPVC RHPLPSQRSG STSTPRAPSA YYNEAADAPE VTRTDLDPAP RNSGSESQER HSSFSFLWPF GPSGSSSSPY
301: QY
001: MSSSRNTHWC HRCQRAVRLH GQEPVCFYCG GGFVEELDMA QASPFDMFRS HRGVVERDQT FDLMDAFSVF MRNRLAERSH DREIRGRTIS SGPENFPGLA
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY
Arabidopsis Description
RHC1AProbable E3 ubiquitin-protein ligase RHC1A [Source:UniProtKB/Swiss-Prot;Acc:O22197]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.