CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG37587
KXG37588

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G08139.1	KXG37587	AT4G14640.1	17360592
AT5G08139.1	KXG37588	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051736_P001	Maize	cytosol	90.0	87.27
Os02t0727700-01	Rice	cytosol, nucleus, plastid	64.38	66.24
TraesCS6A01G288800.1	Wheat	cytosol, plastid	61.56	64.17
TraesCS6B01G318600.1	Wheat	cytosol, plastid	61.25	63.84
HORVU6Hr1G072430.1	Barley	cytosol	62.5	54.95
EES14331	Sorghum	plastid	23.75	25.94
EER90075	Sorghum	nucleus	23.12	24.42
Solyc02g089410.2.1	Tomato	nucleus	22.5	22.02
EER95109	Sorghum	plastid	18.75	21.82
GSMUA_Achr8P24510_001	Banana	cytosol	26.56	21.46
EER92269	Sorghum	nucleus	19.06	21.4
CDY69134	Canola	cytosol	18.75	20.62
PGSC0003DMT400003515	Potato	nucleus	23.75	20.49
EER89027	Sorghum	nucleus	20.31	20.25
KRH56750	Soybean	cytosol	21.56	20.18
CDX78323	Canola	cytosol	18.12	20.14
Bra005970.1-P	Field mustard	cytosol	18.12	20.0
KRH18313	Soybean	nucleus	23.12	19.79
KRH03189	Soybean	nucleus	21.56	19.44
Solyc02g065650.1.1	Tomato	cytosol, nucleus, plastid	24.06	19.4
PGSC0003DMT400063293	Potato	nucleus	25.62	18.98
KRG93748	Soybean	nucleus, plastid	22.5	18.95
VIT_14s0083g00710.t01	Wine grape	nucleus	22.81	18.67
PGSC0003DMT400068309	Potato	cytosol	23.12	18.59
VIT_17s0000g04730.t01	Wine grape	nucleus	25.31	18.45
EES17560	Sorghum	plastid	23.75	18.4
AT5G08139.1	Thale cress	cytosol	21.25	18.09
KXG39475	Sorghum	cytosol	18.12	18.07
CDX69973	Canola	cytosol	20.0	17.78
CDX69496	Canola	cytosol	15.94	17.71
KXG33564	Sorghum	mitochondrion	16.56	17.55
CDY34722	Canola	cytosol	21.25	17.44
CDY21513	Canola	cytosol	19.38	17.42
GSMUA_Achr3P06300_001	Banana	cytosol	28.12	17.24
Bra021467.1-P	Field mustard	nucleus	20.94	17.18
CDY34721	Canola	cytosol	20.94	17.18
Bra008671.1-P	Field mustard	nucleus	15.31	17.07
EER89401	Sorghum	mitochondrion, nucleus	17.81	17.07
EES00577	Sorghum	nucleus	19.06	16.99
Bra009323.1-P	Field mustard	cytosol	20.0	16.89
CDY26465	Canola	cytosol	17.81	16.81
Solyc03g114680.2.1	Tomato	nucleus	25.94	16.67
KXG22238	Sorghum	plastid	20.0	16.45
OQU84547	Sorghum	cytoskeleton, cytosol, nucleus	19.69	16.28
AT3G02340.2	Thale cress	cytosol	20.62	16.14
AT5G15820.1	Thale cress	cytosol	17.5	16.09
KXG37275	Sorghum	nucleus	19.06	15.93
CDX85531	Canola	cytosol	16.56	15.45
CDX90972	Canola	cytosol	15.94	15.22
CDY02194	Canola	peroxisome	18.75	15.08
CDY51628	Canola	peroxisome	19.06	15.02
Bra013006.1-P	Field mustard	nucleus	18.44	14.15
AT5G60820.1	Thale cress	cytosol	18.44	14.08
Bra023539.1-P	Field mustard	cytoskeleton, cytosol, nucleus	17.19	13.85
KXG31176	Sorghum	plastid	15.0	13.48

Protein Annotations

EnsemblPlants:OQU85475	EnsemblPlantsGene:SORBI_3004G252800	EntrezGene:8071742	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PFAM:PF13639	PFscan:PS50089	ProteinID:OQU85475	ProteinID:OQU85475.1
RefSeq:XP_002454349.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0001A85AA3	UniProt:A0A1Z5RPV8
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:59874799..59876176

Molecular Weight (calculated)

34662.3 Da

IEP (calculated)

3.896

GRAVY (calculated)

-0.506

Length

320 amino acids

Sequence
(BLAST)

001: MANDSLAHHL LLPLAGGCWS DVDEEEEEPG NVSFPSFWPP FPALSSDSDS DAASFVRPRM DRPRETAASS FFGLGFHDHD GDDDEWAPPD EDGELALPLC
101: WDCLQLEDHD DDHRRWDVGV SDADEWEQVA GREEEEEEAA ASAVRSLEWE VLLAANSLGS LAVDGDDDLD AGIETYFLDD ADDLLFGQLA AADADHEPPG
201: KCGRPAAKAA VEALPTVVVA EADAQCAVCK DGVEAGERAR RLPCAHLYHD GCILPWLAIR NTCPLCRHEL PTDDPEYEKW KARRAGGDGG DADRRGTAIP
301: AGMMSSSGYL DEWVGEGATD

Best Arabidopsis Sequence Match ( AT5G08139.1 )
(BLAST)

001: MDDLLHQRVE QSQVTPPHDD SNIHGDFDNE ATDESRSETC SVVIEGNCDM VIELGLESGS VIVENLGDSD IDVSNDFDEP DDDDFFVGRT DFGLEFRDIA
101: SSGNDIRLIT VESGSDDDDG VENERELWGI DLNEEDVYVN DDDEYEDDDV SVTIPLCWDS LQLEDREVTA DEFDWEEVGG GGGGGVDDER EIRSGFAQID
201: MNDESLISAS PIISLEGLVT RERAEGSGNL GWEVLLNHTL EINFDVDNRE LYIGGDHDDY VQDYDMLFEQ FADAEVSVIG LPPTSKSFLN NLPVVLLEGE
301: NDDDGGLVCA VCKDEMNIGN KAVQLPCNHK YHSECIVPWL KVRNTCPVCR YELPTDDAEY EQRKTQRTTN TFGMVL

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GYG0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.