CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038528_P001	Maize	cytosol	73.78	86.19
Zm00001d010635_P001	Maize	nucleus	66.07	82.37
Os05t0488800-01	Rice	nucleus	64.27	77.4
TraesCS1D01G305300.1	Wheat	nucleus	64.27	75.3
TraesCS1B01G316300.1	Wheat	nucleus	63.75	74.7
HORVU1Hr1G068950.2	Barley	golgi	69.67	70.21
GSMUA_Achr11P...	Banana	nucleus	30.59	44.07
CDY46577	Canola	nucleus	31.88	42.61
CDY10554	Canola	cytosol	30.85	39.34
CDY26096	Canola	nucleus	29.56	39.12
AT3G13430.2	Thale cress	nucleus	31.62	39.05
Bra027436.1-P	Field mustard	nucleus	30.85	38.84
CDY43991	Canola	nucleus	30.85	38.84
KRG97316	Soybean	nucleus	34.19	38.66
KXG37275	Sorghum	nucleus	36.5	37.08
CDY56022	Canola	nucleus	29.82	37.06
VIT_06s0004g00120.t01	Wine grape	nucleus	34.7	36.68
Bra030854.1-P	Field mustard	nucleus	29.31	36.54
PGSC0003DMT400046527	Potato	nucleus	33.68	36.39
CDY56080	Canola	cytosol	26.48	36.27
Bra037109.1-P	Field mustard	nucleus	31.11	36.23
CDY08249	Canola	cytosol	31.11	36.12
Bra002823.1-P	Field mustard	nucleus	32.65	36.08
CDY32791	Canola	nucleus	32.65	36.08
AT1G55530.2	Thale cress	nucleus	32.39	35.9
AT5G56340.1	Thale cress	nucleus	36.5	35.86
CDX89343	Canola	cytosol, mitochondrion	32.13	35.51
CDX92768	Canola	nucleus	27.51	34.63
Bra026444.1-P	Field mustard	nucleus	32.39	33.96
CDY42740	Canola	nucleus	27.76	33.54
Bra019109.1-P	Field mustard	nucleus	27.51	33.23
AT4G26400.1	Thale cress	nucleus	30.33	33.15
Bra037999.1-P	Field mustard	nucleus	24.68	33.1
CDY50031	Canola	cytosol	24.68	33.1
CDX92770	Canola	nucleus	27.51	33.02
Solyc01g050040.2.1	Tomato	nucleus	24.68	32.88
KXG39475	Sorghum	cytosol	26.99	32.71
CDY28208	Canola	cytosol	19.28	32.33
Bra011215.1-P	Field mustard	cytosol	19.28	32.33
CDX94342	Canola	mitochondrion, nucleus	32.13	32.3
CDY56081	Canola	nucleus	19.54	31.8
EES00577	Sorghum	nucleus	25.96	28.13
KRH70139	Soybean	nucleus	22.11	26.96
EER89027	Sorghum	nucleus	22.11	26.79
EER92269	Sorghum	nucleus	19.54	26.67
KRH08483	Soybean	cytosol, nucleus, plastid	21.59	26.09
Bra028935.1-P	Field mustard	nucleus	36.76	25.18
EER95109	Sorghum	plastid	15.94	22.55
CDY11934	Canola	nucleus	36.76	21.93
KXG33564	Sorghum	mitochondrion	16.71	21.52
CDY23599	Canola	golgi, mitochondrion	33.42	21.35
OQU85475	Sorghum	cytosol	16.45	20.0
EER90075	Sorghum	nucleus	14.65	18.81
EER89401	Sorghum	mitochondrion, nucleus	15.94	18.56
KXG31176	Sorghum	plastid	16.2	17.7
EES17560	Sorghum	plastid	18.77	17.68
EES14331	Sorghum	plastid	13.11	17.41
OQU84547	Sorghum	cytoskeleton, cytosol, nucleus	14.4	14.47

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:8064158	EntrezGene:8077023	UniProt:A0A1B6P982	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625
GO:GO:0042254	InterPro:IPR001841	InterPro:IPR013083	EnsemblPlants:KXG22238	ProteinID:KXG22238	ProteinID:KXG22238.1
PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44576	PANTHER:PTHR44576:SF3	SMART:SM00184
EnsemblPlantsGene:SORBI_3009G178100	SUPFAM:SSF57850	UniParc:UPI00081AE2B0	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

hypothetical protein

Coordinates

chr9:-:53295456..53297956

Molecular Weight (calculated)

42832.2 Da

IEP (calculated)

4.323

GRAVY (calculated)

-0.661

Length

389 amino acids

Sequence
(BLAST)

001: MPATCPVTSL LFVPLHHPTT PVPPKLPRTG ARRRRTSAVV QSASASRGNS RQREARIWRM TEAAVTRYWC HGCEKAIEEA MGEEIKCPFC DGGFIEEMIG
101: EEFEGLVSQQ SERDLSQWGT SNNPFEQPGS AADSEDEDDD DDDIGREFEG FIRRHGRASA LRRVLDSIQD DLRADRERDH SVLINAFNQA LALQGSVLDA
201: DEARDDQGGS NNDDGLLEEY VLGAGLSLLL QHLAENDPNR YGTPPAKKEA VEALPTVQIA EVVSCSVCLD DLELGSHAKQ MPCEHKFHSP CILPWLELHS
301: SCPVCRFELP SEETKDLNEP SNVDRTESTQ EEVRADGPEN DSESSNRAWA LVPWFSGLFS TPEPQTARGA FTDQQTPSAS GTNPNAGES

Best Arabidopsis Sequence Match ( AT1G55530.2 )
(BLAST)

001: MEEAVVTRYW CHMCSQTVNP VMEAEIKCPF CQSGFVEEME DDDDHDSSDP ADVRANNSLW APILMELMND PVRRRRNQSV ESVEDNQNEV QTENNEDDGE
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S

Arabidopsis Description

At1g55530/T5A14_7 [Source:UniProtKB/TrEMBL;Acc:Q9ZVU8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.