Factsheet for VIT_06s0004g00120.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97316	Soybean	nucleus	58.7	62.79
CDY46577	Canola	nucleus	46.47	58.76
PGSC0003DMT400046527	Potato	nucleus	56.79	58.06
Bra002823.1-P	Field mustard	nucleus	51.9	54.26
CDY32791	Canola	nucleus	51.63	53.98
AT5G56340.1	Thale cress	nucleus	57.34	53.28
GSMUA_Achr11P...	Banana	nucleus	38.59	52.59
CDX92768	Canola	nucleus	43.75	52.1
CDX92770	Canola	nucleus	44.02	50.0
CDY42740	Canola	nucleus	43.48	49.69
Bra019109.1-P	Field mustard	nucleus	43.21	49.38
AT4G26400.1	Thale cress	nucleus	47.28	48.88
Bra026444.1-P	Field mustard	nucleus	48.1	47.71
CDX89343	Canola	cytosol, mitochondrion	44.29	46.31
Os03t0812200-01	Rice	nucleus	45.11	44.99
CDX94342	Canola	mitochondrion, nucleus	45.92	43.67
Solyc01g050040.2.1	Tomato	nucleus	33.42	42.12
Zm00001d010635_P001	Maize	nucleus	35.33	41.67
Os05t0488800-01	Rice	nucleus	36.41	41.49
KXG37275	Sorghum	nucleus	42.93	41.25
Zm00001d013005_P002	Maize	nucleus	41.58	41.24
TraesCS1D01G305300.1	Wheat	nucleus	36.68	40.66
TraesCS1B01G316300.1	Wheat	nucleus	36.41	40.36
TraesCS5B01G480100.1	Wheat	nucleus	43.48	39.8
HORVU5Hr1G111530.1	Barley	nucleus	42.93	39.7
TraesCS5D01G480800.1	Wheat	nucleus	42.93	39.11
TraesCS5A01G467700.1	Wheat	nucleus	42.93	39.11
Zm00001d038528_P001	Maize	cytosol	35.33	39.04
VIT_17s0000g08400.t01	Wine grape	nucleus	14.95	38.46
HORVU1Hr1G068950.2	Barley	golgi	36.96	35.23
KXG22238	Sorghum	plastid	36.68	34.7
Bra028935.1-P	Field mustard	nucleus	52.45	33.98
CDY11934	Canola	nucleus	52.99	29.91
VIT_08s0040g00590.t01	Wine grape	nucleus	23.91	28.03
VIT_17s0053g00320.t01	Wine grape	plastid	26.09	26.02
VIT_06s0009g02350.t01	Wine grape	mitochondrion	22.55	24.7
VIT_18s0001g14530.t01	Wine grape	cytosol, nucleus, plastid	22.28	24.55
VIT_12s0034g01400.t01	Wine grape	endoplasmic reticulum, mitochondrion, nucleus, plastid	16.58	23.37
VIT_18s0001g03270.t01	Wine grape	nucleus	20.65	22.82
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	23.91	22.8
VIT_08s0007g00720.t01	Wine grape	plastid	23.37	16.67
VIT_12s0034g01390.t01	Wine grape	mitochondrion	19.29	15.74
VIT_17s0000g04730.t01	Wine grape	nucleus	16.03	13.44
VIT_08s0056g00320.t01	Wine grape	mitochondrion	20.65	12.88
VIT_14s0083g00710.t01	Wine grape	nucleus	13.32	12.53

Protein Annotations

EntrezGene:100250148	wikigene:100250148	Gene3D:3.30.40.10	MapMan:35.1	ProteinID:CCB43822	ProteinID:CCB43822.1
UniProt:F6GUP5	EMBL:FN594951	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538
GO:GO:0042787	GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	EntrezGene:LOC100250148
wikigene:LOC100250148	PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44576	PANTHER:PTHR44576:SF4
SMART:SM00184	SUPFAM:SSF57850	TIGR:TC63361	UniParc:UPI00015C81DF	ArrayExpress:VIT_06s0004g00120	EnsemblPlantsGene:VIT_06s0004g00120
EnsemblPlants:VIT_06s0004g00120.t01	unigene:Vvi.2362	RefSeq:XP_002285765	RefSeq:XP_002285765.1	RefSeq:XP_002285766	RefSeq:XP_002285766.1
RefSeq:XP_019076258.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:+:257501..259353

Molecular Weight (calculated)

40902.8 Da

IEP (calculated)

4.563

GRAVY (calculated)

-0.918

Length

368 amino acids

Sequence
(BLAST)

001: MEDAMGGRYW CHSCSQVVNP IAEAEPKCPL CQDGFIEDID GTASRDHNDS DSDLASDRTL SLWAPILLGM MGNPRRRRRF RREDIEDEEE DNEDGEGRRG
101: GETELDRELD SIIRRRRRSS ATILQLLQGI RAGMVSESEN SENDRDRDRD RERERERERL ILINPFNQTI IVQGSFDSNQ AQNQNQNTIG SLGDYFIGPS
201: LDLLLQHLAE NDPNRYGTPP AQKDAIEAMP TVKIKENLQC SVCLDDFEIG AEAREMPCKH KFHSGCILPW LELHSSCPVC RFQIAADESK LDSDASPNVS
301: SNSSERSNNG HGSSEEGDGD GRSGNGRRST FRWPFTSLFS SQGSQTSNGN SSSSGANAPG SASRANEN

Best Arabidopsis Sequence Match ( AT5G56340.1 )
(BLAST)

001: MEETMAARYW CHMCSQMVNP VMESEIKCPF CQSGFIEEMS GNGGGGGGRG IRDVQDSETD FGTDRALSLW APILLGMMSS PRRRRRFRRS EFGEENDDNG
101: DDLTTNADGN GNDSNNSNNN VYRHHRARRH GGEIDLDREF ESILRRRRRS SGNILQLLQG IRAGIASEYE SSDNNWDNSR ERDRVIMINP YNQSLVVPSD
201: QNQNHPSLTS LGDYFIGPGL DLLLQHLAEN DPNRQGTPPA RKEAVEALPT VKIMEPLQCS VCLDDFEKGT EAKEMPCKHK FHVRCIVPWL ELHSSCPVCR
301: FELPSSADDD DETKTDSERV LRTRNVRETS NGNVVENVGN ADRGREDEVR SGNGRRFSFP WPFSGLFSSS SSSSSSTSGS QSGENNFFSR SSGSSR

Arabidopsis Description

ATCRT1RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FM98]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.