Factsheet for TraesCS5B01G480100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G480800.1	Wheat	nucleus	98.51	98.02
TraesCS5A01G467700.1	Wheat	nucleus	98.01	97.52
HORVU5Hr1G111530.1	Barley	nucleus	95.02	95.98
Os03t0812200-01	Rice	nucleus	70.4	76.69
KXG37275	Sorghum	nucleus	64.43	67.62
Zm00001d013005_P002	Maize	nucleus	61.19	66.31
GSMUA_Achr11P...	Banana	nucleus	32.34	48.15
CDY46577	Canola	nucleus	33.83	46.74
KRG97316	Soybean	nucleus	37.56	43.9
VIT_06s0004g00120.t01	Wine grape	nucleus	39.8	43.48
PGSC0003DMT400046527	Potato	nucleus	38.56	43.06
Bra027436.1-P	Field mustard	nucleus	32.84	42.72
CDY43991	Canola	nucleus	32.84	42.72
Bra002823.1-P	Field mustard	nucleus	36.32	41.48
CDY32791	Canola	nucleus	36.07	41.19
CDX92768	Canola	nucleus	31.34	40.78
CDY10554	Canola	cytosol	30.85	40.66
Bra030854.1-P	Field mustard	nucleus	31.09	40.06
AT3G13430.2	Thale cress	nucleus	31.09	39.68
AT1G55530.2	Thale cress	nucleus	34.33	39.32
CDY56022	Canola	nucleus	30.6	39.3
AT5G56340.1	Thale cress	nucleus	38.31	38.89
CDX92770	Canola	nucleus	31.34	38.89
TraesCS1B01G316300.1	Wheat	nucleus	32.09	38.86
CDY42740	Canola	nucleus	30.35	37.89
Bra019109.1-P	Field mustard	nucleus	30.1	37.58
Bra037109.1-P	Field mustard	nucleus	31.09	37.43
CDY26096	Canola	nucleus	27.36	37.41
AT4G26400.1	Thale cress	nucleus	33.08	37.36
CDY28208	Canola	cytosol	21.39	37.07
Bra011215.1-P	Field mustard	cytosol	21.39	37.07
CDY08249	Canola	cytosol	30.85	37.01
CDY56080	Canola	cytosol	25.87	36.62
Bra026444.1-P	Field mustard	nucleus	33.33	36.12
CDX89343	Canola	cytosol, mitochondrion	31.34	35.8
CDY50031	Canola	cytosol	25.62	35.52
Bra037999.1-P	Field mustard	nucleus	25.37	35.17
CDY56081	Canola	nucleus	20.15	33.89
Solyc01g050040.2.1	Tomato	nucleus	24.38	33.56
TraesCS3B01G218400.1	Wheat	cytosol	30.6	33.06
CDX94342	Canola	mitochondrion, nucleus	31.59	32.82
TraesCS4B01G174800.1	Wheat	cytosol	28.36	32.57
KRH08483	Soybean	cytosol, nucleus, plastid	24.38	30.43
KRH70139	Soybean	nucleus	23.88	30.09
TraesCS3B01G474100.1	Wheat	mitochondrion	19.65	27.43
TraesCS4B01G209100.1	Wheat	plastid	18.16	26.07
Bra028935.1-P	Field mustard	nucleus	36.82	26.06
TraesCS7B01G144100.1	Wheat	plastid	15.67	23.42
TraesCS3B01G595200.1	Wheat	cytosol	23.13	23.31
TraesCS1B01G179000.1	Wheat	cytosol, mitochondrion, plastid, vacuole	21.39	23.31
CDY11934	Canola	nucleus	36.82	22.7
TraesCS1B01G036900.1	Wheat	cytosol	21.89	22.06
CDY23599	Canola	golgi, mitochondrion	32.59	21.51
TraesCS6B01G318600.1	Wheat	cytosol, plastid	14.68	19.22
TraesCS3B01G361000.1	Wheat	cytosol	16.17	18.95
TraesCS7B01G074800.1	Wheat	mitochondrion	14.93	18.63
TraesCS6B01G361600.1	Wheat	mitochondrion	15.42	18.4
TraesCS7B01G293600.1	Wheat	cytosol	11.94	14.55
TraesCS6B01G198800.1	Wheat	nucleus	13.68	13.72
TraesCS5B01G144700.1	Wheat	nucleus	14.43	11.37

Protein Annotations

EnsemblPlants:TraesCS5B01G480100.1	EnsemblPlantsGene:TraesCS5B01G480100	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR44576	PANTHER:PTHR44576:SF4	PFAM:PF13639	PFAM:PF14369
PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16667	MapMan:35.1

Description

No Description!

Coordinates

chr5B:+:652632771..652633979

Molecular Weight (calculated)

45027.4 Da

IEP (calculated)

4.393

GRAVY (calculated)

-1.045

Length

402 amino acids

Sequence
(BLAST)

001: MEEGQESRYW CHSCAEVIVP VEPEKKCPDC DGGFVEEMES EGFEPSTNVR SERNLSLWAP LLLGMMGGSS RRSRPQRDMM DSSSDEDSRQ ARIRSALRDT
101: DDEDEEDDDD DSDRELEDMI RRRRRRGSSL VRLLQTLRDD LRGLDGIGRD RDRDSERDRE RERERRDRER RERERARRER ERARERDRGG ERTESLILIN
201: SNNEAIILQG TFGPSDNQEN SSNTSTGVSL GDYFLGPGLD MLLQRLADSD LNRSGTPPAK KESVAALPTV NIQEVLGCTV CLEEFEMGTE AKEMPCQHKF
301: HSNCILPWLE LHSSCPICRF QLPTEESKNP CESGSGGGTV SADGDHAESS NSDIEGANHD GGRLLDGSSI NDRDVTSALN AIFGDESSSS SSDENGPRAS
401: ES

Best Arabidopsis Sequence Match ( AT1G55530.1 )
(BLAST)

001: MEEAVVTRYW CHMCSQTVNP VMEAEIKCPF CQSGFVEEME DDDDHDSSDP ADVRANNSLW APILMELMND PVRRRRNQSV ESVEDNQNEV QTENNEDDGE
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S

Arabidopsis Description

At1g55530/T5A14_7 [Source:UniProtKB/TrEMBL;Acc:Q9ZVU8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.