Factsheet for TraesCS1B01G179000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, vacuole, cytosol

Predictor Summary:

mitochondrion 3
cytosol 1
plastid 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G162400.1	Wheat	cytosol, mitochondrion, plastid, vacuole	98.64	98.38
TraesCS1D01G159200.1	Wheat	cytosol, mitochondrion, plastid, vacuole	98.64	98.38
HORVU1Hr1G043220.1	Barley	cytosol, mitochondrion, plastid, vacuole	95.94	96.46
Os10t0487400-01	Rice	mitochondrion, nucleus, plastid, vacuole	74.53	74.32
Zm00001d013971_P001	Maize	cytosol, mitochondrion, plastid, vacuole	75.88	72.73
Zm00001d032646_P001	Maize	cytosol	70.19	69.07
GSMUA_Achr5P19380_001	Banana	plastid	23.85	46.07
TraesCS3B01G474100.1	Wheat	mitochondrion	23.85	30.56
TraesCS4B01G209100.1	Wheat	plastid	21.68	28.57
TraesCS7B01G074800.1	Wheat	mitochondrion	23.04	26.4
TraesCS7B01G144100.1	Wheat	plastid	18.97	26.02
TraesCS1B01G316300.1	Wheat	nucleus	23.04	25.6
TraesCS1B01G036900.1	Wheat	cytosol	27.37	25.31
TraesCS6B01G361600.1	Wheat	mitochondrion	22.76	24.93
TraesCS4B01G174800.1	Wheat	cytosol	23.58	24.86
TraesCS6B01G318600.1	Wheat	cytosol, plastid	20.6	24.76
TraesCS3B01G218400.1	Wheat	cytosol	24.93	24.73
TraesCS3B01G595200.1	Wheat	cytosol	26.29	24.31
TraesCS3B01G361000.1	Wheat	cytosol	20.87	22.45
TraesCS7B01G293600.1	Wheat	cytosol	19.78	22.12
TraesCS5B01G480100.1	Wheat	nucleus	23.31	21.39
TraesCS5B01G144700.1	Wheat	nucleus	21.41	15.49
TraesCS6B01G198800.1	Wheat	nucleus	15.99	14.71

Protein Annotations

EnsemblPlants:TraesCS1B01G179000.1	EnsemblPlantsGene:TraesCS1B01G179000	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44679	PANTHER:PTHR44679:SF2	PFAM:PF13639	PFAM:PF14369	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16667	MapMan:35.1	:

Description

No Description!

Coordinates

chr1B:+:324601161..324602270

Molecular Weight (calculated)

38037.8 Da

IEP (calculated)

4.160

GRAVY (calculated)

-0.248

Length

369 amino acids

Sequence
(BLAST)

001: MSTPGAAYYA SLARKQYFCY QCNRTVLIAA SAAAAGELSC PDCRGDFLEE VTVPAPTILP FPFAFPPMMP TASSPSRSSS SSTAAPPSSD LSNFLTSILD
101: LQEGRRVRSR SGSGAASAAG TATPENEPES FDPLVFFQNY IHTLMEGGAN IQVLLDDASV NLAPGLGGRA GGTSYGDYFV GPGLEQLIEQ LAENDPNRYG
201: TPPAAKSALT TLPDVVVTDA MVAAAEGAEC AVCKEDFSPG DGAKQMPCKH IYHADCIVPW LELHNSCPIC RFELPTDDPD YEGNKASNAQ SAVGIAAAAA
301: SGSSGAAEEG GEESGEAARV VERRFNVSLA WPFGGLAGQT PQQDGNNAGA GSSSQDSGSQ DGAGGSNKN

Best Arabidopsis Sequence Match ( AT3G19950.2 )
(BLAST)

001: MGFSPKSVII VSELESATYD ITENYFSLSS DGSFLPSSSR FFCFVVSLSR SEKFAESVMS SGVNSTGSAA AAPEVDKMFF CYQCNQTVTI SISSSADPFC
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.