Factsheet for Os10t0487400-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, vacuole

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
mitochondrion 3
nucleus 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus, plastid, vacuole
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G043220.1	Barley	cytosol, mitochondrion, plastid, vacuole	74.86	75.48
TraesCS1D01G159200.1	Wheat	cytosol, mitochondrion, plastid, vacuole	74.59	74.59
TraesCS1A01G162400.1	Wheat	cytosol, mitochondrion, plastid, vacuole	74.59	74.59
TraesCS1B01G179000.1	Wheat	cytosol, mitochondrion, plastid, vacuole	74.32	74.53
Zm00001d013971_P001	Maize	cytosol, mitochondrion, plastid, vacuole	73.24	70.39
Zm00001d032646_P001	Maize	cytosol	67.03	66.13
GSMUA_Achr5P19380_001	Banana	plastid	23.78	46.07
Os06t0633500-01	Rice	cytosol, nucleus	14.86	44.35
Os06t0101300-01	Rice	nucleus	36.49	39.94
Os03t0351800-01	Rice	nucleus	24.59	32.16
Os03t0271600-01	Rice	plastid	20.81	27.6
Os03t0324900-01	Rice	cytosol	23.78	27.5
Os05t0495000-00	Rice	mitochondrion	21.08	27.27
Os02t0767600-00	Rice	mitochondrion	22.7	25.61
Os08t0487500-01	Rice	plastid	18.38	25.09
Os01t0802000-01	Rice	nucleus	21.35	24.01
Os01t0276600-01	Rice	nucleus	21.08	23.71
Os05t0488800-01	Rice	nucleus	20.54	23.53
Os03t0812200-01	Rice	nucleus	22.16	22.22
Os02t0727700-01	Rice	cytosol, nucleus, plastid	18.65	22.19
Os05t0110000-01	Rice	mitochondrion	19.73	21.92
Os01t0972000-01	Rice	nucleus	17.84	19.76
Os02t0191500-01	Rice	nucleus	16.22	16.0
Os11t0119200-01	Rice	nucleus	18.92	14.26
Os12t0118700-01	Rice	nucleus	18.92	14.03

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:4348952	ProteinID:AAL59019.1	ProteinID:AAP54362.1	EMBL:AK102471
ProteinID:BAT11397.1	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0043161
GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	EnsemblPlantsGene:Os10g0487400	EnsemblPlants:Os10t0487400-01	PFAM:PF13639
PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44679	PANTHER:PTHR44679:SF2	UniProt:Q7XD81	SMART:SM00184
SUPFAM:SSF57850	UniParc:UPI000009D4CB	RefSeq:XP_015614713.1	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os10t0487400-01);Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os10t0487400-02);Similar to Zinc finger, C3HC4 type family protein, expressed. (Os10t0487400-03)

Coordinates

chr10:-:18438792..18442388

Molecular Weight (calculated)

38228.3 Da

IEP (calculated)

4.161

GRAVY (calculated)

-0.249

Length

370 amino acids

Sequence
(BLAST)

001: MSNPAAYYAA VARKQYFCYQ CNRTVLLPAS AAAAGALSCP ECRGDFIEEV NVPAPAIIPF PFAFPPMMPT ATSASAAAAA AASPTQSSSS SAATSPSSDL
101: SAFLNSMLGP LNLRTDERMP GTTSAAGTAT PEDEPDGFDA VTFFQNYLQN LMDGGANIQV LLDDASVGLA PGIGRVGGAS FGDYFVGPGL EQLIEQLTEN
201: DPNRYGTPPA AKSALSTLPD VVVTDAMVAA ADGAECAVCK EDFSPGEGAK QMPCKHIYHA DCIMPWLDLH NSCPICRFEL PTDDPDYEGR KKSNPQPTAG
301: VDAGAASGSS TAAEEREESG ESARLVERRF NVSLPWPFSG LGSQTPQQDG SNGGAGASGS KDGGASSDKK

Best Arabidopsis Sequence Match ( AT3G19950.1 )
(BLAST)

001: MSSGVNSTGS AAAAPEVDKM FFCYQCNQTV TISISSSADP FCPICNQGFL EEYEDPNPNQ SLNFNPNSSD SFFPMADPFS TLLPLIFGSS AAAPSGMDFM
101: SLFGPSMQPQ ARSTQQNPQS DAFDPFTFLQ NHLQTLRSSG THFEFVIENH PSDPGNRMPG NFGDYFFGPG LEQLIQQLAE NDPNRYGTPP ASKSAIDALP
201: TVKVTKDMLK SEMNQCAVCM DEFEDGSDVK QMPCKHVFHQ DCLLPWLELH NSCPVCRFEL PTDDPDYENR SQGSQGSGDG QGSVEGQQTP RFSIQLPWPF
301: RRQDGSGSGS GAPGTGGGNL ETRGEDLD

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQQ9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.