Factsheet for Zm00001d013971_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, vacuole, cytosol

Predictor Summary:

mitochondrion 3
cytosol 1
plastid 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032646_P001	Maize	cytosol	84.94	87.2
TraesCS1D01G159200.1	Wheat	cytosol, mitochondrion, plastid, vacuole	73.51	76.49
HORVU1Hr1G043220.1	Barley	cytosol, mitochondrion, plastid, vacuole	72.73	76.29
TraesCS1A01G162400.1	Wheat	cytosol, mitochondrion, plastid, vacuole	73.25	76.22
TraesCS1B01G179000.1	Wheat	cytosol, mitochondrion, plastid, vacuole	72.73	75.88
Os10t0487400-01	Rice	mitochondrion, nucleus, plastid, vacuole	70.39	73.24
GSMUA_Achr5P19380_001	Banana	plastid	23.64	47.64
Zm00001d045625_P001	Maize	cytosol	34.03	42.26
Zm00001d047476_P001	Maize	mitochondrion	24.94	32.88
Zm00001d047824_P001	Maize	plastid	20.52	28.42
Zm00001d028590_P001	Maize	plastid	20.52	28.42
Zm00001d047560_P001	Maize	cytosol	22.34	27.83
Zm00001d035677_P001	Maize	plastid	24.42	27.01
Zm00001d046663_P001	Maize	cytosol	20.26	26.17
Zm00001d052154_P001	Maize	mitochondrion	21.3	25.79
Zm00001d040445_P001	Maize	nucleus	23.12	25.72
Zm00001d010635_P001	Maize	nucleus	20.78	25.64
Zm00001d037167_P001	Maize	cytosol, mitochondrion, nucleus, plastid	22.6	25.59
Zm00001d018190_P001	Maize	mitochondrion	21.82	25.23
Zm00001d038528_P001	Maize	cytosol	21.56	24.92
Zm00001d043183_P001	Maize	plastid	21.04	24.92
Zm00001d008237_P001	Maize	nucleus	22.08	24.36
Zm00001d011076_P001	Maize	plastid	24.42	24.29
Zm00001d012564_P001	Maize	mitochondrion	21.56	23.99
Zm00001d031273_P001	Maize	cytosol, plastid	16.62	22.15
Zm00001d013005_P002	Maize	nucleus	21.3	22.1
Zm00001d051736_P001	Maize	cytosol	18.18	21.21
Zm00001d053704_P001	Maize	cytosol	15.06	16.29

Protein Annotations

EntrezGene:100192058	Gene3D:3.30.40.10	MapMan:35.1	ProteinID:AQK64930.1	UniProt:B4FB62	EMBL:BT034350
GO:GO:0003674	GO:GO:0003824	GO:GO:0016874	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF13639
PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44679	PANTHER:PTHR44679:SF2	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI00017B63BE	EnsemblPlantsGene:Zm00001d013971	EnsemblPlants:Zm00001d013971_P001	EnsemblPlants:Zm00001d013971_T001	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

E3 ubiquitin-protein ligase RING1-like

Coordinates

chr5:-:26721609..26722766

Molecular Weight (calculated)

39764.0 Da

IEP (calculated)

4.252

GRAVY (calculated)

-0.239

Length

385 amino acids

Sequence
(BLAST)

001: MSTPAAAYYA AAARKQYFCY QCNRTVLIAA SAAAAGELSC PECHGDFLEE VTVPAPTFIP LPFPFPFAPT TIPAASTTPA PAPAAGSGGS PSLSSSSSSA
101: ATSPSQPNDI SSILNSFLGL GEQPIRVGGS ASRAAAGTAT PENEPEPFDP VMFFQNYIHS LVEGGANIQV LLDDASVTLG SGPGLGRIGG ASFGDYFVGP
201: GLEQLIEQLA ENDPNRYGTP PAAKSVLSSL PDVLVTHAMV AAAEGAECAV CKEDFSPGEV AKQMPCKHIY HTDCIVPWLE LHNSCPICRF ELPTDDPDYE
301: GRKGTNPQPA VGVAAAASGS STAAEGQMEE RQENPRVVER RFNVSLPWPF SGLGGQTSQQ DGNSGGSGSN SQGNAQDGDP PSNKN

Best Arabidopsis Sequence Match ( AT3G19950.2 )
(BLAST)

001: MGFSPKSVII VSELESATYD ITENYFSLSS DGSFLPSSSR FFCFVVSLSR SEKFAESVMS SGVNSTGSAA AAPEVDKMFF CYQCNQTVTI SISSSADPFC
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.