Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d038528_P001 | Maize | cytosol | 74.36 | 69.67 |
| Os05t0488800-01 | Rice | nucleus | 69.55 | 67.18 |
| KXG22238 | Sorghum | plastid | 82.37 | 66.07 |
| TraesCS1D01G305300.1 | Wheat | nucleus | 68.27 | 64.16 |
| TraesCS1B01G316300.1 | Wheat | nucleus | 67.95 | 63.86 |
| HORVU1Hr1G068950.2 | Barley | golgi | 70.83 | 57.25 |
| GSMUA_Achr11P... | Banana | nucleus | 37.18 | 42.96 |
| CDY46577 | Canola | nucleus | 38.46 | 41.24 |
| CDY26096 | Canola | nucleus | 35.9 | 38.1 |
| KRG97316 | Soybean | nucleus | 41.67 | 37.79 |
| CDY10554 | Canola | cytosol | 36.86 | 37.7 |
| Bra027436.1-P | Field mustard | nucleus | 36.86 | 37.22 |
| CDY43991 | Canola | nucleus | 36.86 | 37.22 |
| CDY56080 | Canola | cytosol | 33.33 | 36.62 |
| AT3G13430.2 | Thale cress | nucleus | 36.22 | 35.87 |
| CDY56022 | Canola | nucleus | 35.58 | 35.46 |
| VIT_06s0004g00120.t01 | Wine grape | nucleus | 41.67 | 35.33 |
| Bra030854.1-P | Field mustard | nucleus | 35.26 | 35.26 |
| AT1G55530.2 | Thale cress | nucleus | 39.42 | 35.04 |
| Bra037109.1-P | Field mustard | nucleus | 37.5 | 35.03 |
| CDY08249 | Canola | cytosol | 37.5 | 34.93 |
| PGSC0003DMT400046527 | Potato | nucleus | 40.06 | 34.72 |
| CDY32791 | Canola | nucleus | 39.1 | 34.66 |
| Bra002823.1-P | Field mustard | nucleus | 39.1 | 34.66 |
| Zm00001d047560_P001 | Maize | cytosol | 33.97 | 34.3 |
| Zm00001d013005_P002 | Maize | nucleus | 40.38 | 33.96 |
| AT5G56340.1 | Thale cress | nucleus | 42.95 | 33.84 |
| Bra037999.1-P | Field mustard | nucleus | 31.41 | 33.79 |
| CDY50031 | Canola | cytosol | 31.41 | 33.79 |
| CDX92768 | Canola | nucleus | 32.69 | 33.01 |
| CDY28208 | Canola | cytosol | 23.72 | 31.9 |
| Bra011215.1-P | Field mustard | cytosol | 23.72 | 31.9 |
| CDY56081 | Canola | nucleus | 24.36 | 31.8 |
| CDY42740 | Canola | nucleus | 32.69 | 31.68 |
| CDX89343 | Canola | cytosol, mitochondrion | 35.58 | 31.53 |
| CDX92770 | Canola | nucleus | 32.69 | 31.48 |
| Bra019109.1-P | Field mustard | nucleus | 32.37 | 31.37 |
| Solyc01g050040.2.1 | Tomato | nucleus | 29.17 | 31.16 |
| Bra026444.1-P | Field mustard | nucleus | 36.54 | 30.73 |
| AT4G26400.1 | Thale cress | nucleus | 34.62 | 30.34 |
| Zm00001d008237_P001 | Maize | nucleus | 33.33 | 29.8 |
| Zm00001d040445_P001 | Maize | nucleus | 33.01 | 29.77 |
| CDX94342 | Canola | mitochondrion, nucleus | 35.58 | 28.68 |
| Zm00001d045625_P001 | Maize | cytosol | 25.32 | 25.48 |
| KRH70139 | Soybean | nucleus | 25.32 | 24.76 |
| Zm00001d047476_P001 | Maize | mitochondrion | 22.44 | 23.97 |
| KRH08483 | Soybean | cytosol, nucleus, plastid | 24.68 | 23.91 |
| Bra028935.1-P | Field mustard | nucleus | 41.35 | 22.71 |
| Zm00001d047824_P001 | Maize | plastid | 18.91 | 21.22 |
| Zm00001d028590_P001 | Maize | plastid | 18.91 | 21.22 |
| Zm00001d032646_P001 | Maize | cytosol | 25.32 | 21.07 |
| Zm00001d013971_P001 | Maize | cytosol, mitochondrion, plastid, vacuole | 25.64 | 20.78 |
| Zm00001d043183_P001 | Maize | plastid | 20.83 | 20.0 |
| CDY11934 | Canola | nucleus | 41.03 | 19.63 |
| CDY23599 | Canola | golgi, mitochondrion | 37.5 | 19.21 |
| Zm00001d052154_P001 | Maize | mitochondrion | 19.55 | 19.18 |
| Zm00001d035677_P001 | Maize | plastid | 21.15 | 18.97 |
| Zm00001d018190_P001 | Maize | mitochondrion | 19.87 | 18.62 |
| Zm00001d012564_P001 | Maize | mitochondrion | 20.51 | 18.5 |
| Zm00001d051736_P001 | Maize | cytosol | 19.23 | 18.18 |
| Zm00001d046663_P001 | Maize | cytosol | 16.99 | 17.79 |
| Zm00001d037167_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 19.23 | 17.65 |
| Zm00001d031273_P001 | Maize | cytosol, plastid | 16.35 | 17.65 |
| Zm00001d011076_P001 | Maize | plastid | 20.83 | 16.8 |
| Zm00001d053704_P001 | Maize | cytosol | 15.38 | 13.48 |
Protein Annotations
| EMBL:BT038951 | EnsemblPlants:Zm00001d010635_P001 | EnsemblPlants:Zm00001d010635_T001 | EnsemblPlantsGene:Zm00001d010635 | EntrezGene:100272564 | Gene3D:3.30.40.10 |
| InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44576 | PANTHER:PTHR44576:SF3 |
| PFAM:PF13639 | PFAM:PF14369 | PFscan:PS50089 | ProteinID:AQK94535.1 | SEG:seg | SMART:SM00184 |
| SUPFAM:SSF57850 | UniParc:UPI00017B7D68 | UniProt:B4FPB3 | MapMan:35.1 | : | : |
Description
RING/U-box superfamily protein
Coordinates
chr8:-:122679613..122680551
Molecular Weight (calculated)
34134.0 Da
IEP (calculated)
4.130
GRAVY (calculated)
-0.631
Length
312 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEAAVNTRY WCHGCEKVIE EAMVGEDIKC PFCGGGFIEE MAGEDSEGLQ LEREWGTPPG DSEDDDDDDI AHEFEGFIRR HGRASALRRV LDSIQDDLRA
101: DRERDNSVLI NAFNQALASQ GSALLDADEA RDGRGGSSNS NDDGLLEEYD VLGAGLSLLL QHLAENDPNR YGTPPAKREA VEALPTVQIA EAVSCSVCLD
201: DLELGSPAKQ MPCGHRFHSS CILPWLELHS SCPVCRFELP SEETKDLNEP SDVHRRTEST RENDSESGNS AWPLVPWFFS GLFSVPEPSH TDRGTLTTDQ
301: QSPSTNPNAG GN
101: DRERDNSVLI NAFNQALASQ GSALLDADEA RDGRGGSSNS NDDGLLEEYD VLGAGLSLLL QHLAENDPNR YGTPPAKREA VEALPTVQIA EAVSCSVCLD
201: DLELGSPAKQ MPCGHRFHSS CILPWLELHS SCPVCRFELP SEETKDLNEP SDVHRRTEST RENDSESGNS AWPLVPWFFS GLFSVPEPSH TDRGTLTTDQ
301: QSPSTNPNAG GN
001: MEEAVVTRYW CHMCSQTVNP VMEAEIKCPF CQSGFVEEME DDDDHDSSDP ADVRANNSLW APILMELMND PVRRRRNQSV ESVEDNQNEV QTENNEDDGE
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S
Arabidopsis Description
At1g55530/T5A14_7 [Source:UniProtKB/TrEMBL;Acc:Q9ZVU8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.