Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d008237_P001 | Maize | nucleus | 91.33 | 90.54 |
| EES00577 | Sorghum | nucleus | 92.2 | 88.86 |
| TraesCS3D01G192700.1 | Wheat | cytosol | 59.83 | 56.25 |
| TraesCS3A01G189200.1 | Wheat | cytosol | 60.12 | 55.47 |
| TraesCS3B01G218400.1 | Wheat | cytosol | 59.54 | 55.38 |
| HORVU3Hr1G039220.1 | Barley | cytosol | 60.12 | 55.17 |
| Os01t0276600-01 | Rice | nucleus | 46.82 | 49.24 |
| GSMUA_Achr9P05060_001 | Banana | nucleus | 22.25 | 41.4 |
| Zm00001d047560_P001 | Maize | cytosol | 36.13 | 40.45 |
| GSMUA_Achr7P18340_001 | Banana | nucleus | 34.97 | 40.33 |
| GSMUA_Achr6P08590_001 | Banana | nucleus | 33.53 | 39.59 |
| GSMUA_Achr5P07680_001 | Banana | nucleus | 32.95 | 38.26 |
| GSMUA_Achr10P... | Banana | nucleus | 30.35 | 34.65 |
| Zm00001d010635_P001 | Maize | nucleus | 29.77 | 33.01 |
| Zm00001d013005_P002 | Maize | nucleus | 33.53 | 31.27 |
| Zm00001d038528_P001 | Maize | cytosol | 28.9 | 30.03 |
| Zm00001d047476_P001 | Maize | mitochondrion | 23.99 | 28.42 |
| Zm00001d045625_P001 | Maize | cytosol | 24.57 | 27.42 |
| Zm00001d028590_P001 | Maize | plastid | 19.36 | 24.1 |
| Zm00001d032646_P001 | Maize | cytosol | 26.01 | 24.0 |
| Zm00001d047824_P001 | Maize | plastid | 19.08 | 23.74 |
| Zm00001d013971_P001 | Maize | cytosol, mitochondrion, plastid, vacuole | 25.72 | 23.12 |
| Zm00001d035677_P001 | Maize | plastid | 23.12 | 22.99 |
| Zm00001d043183_P001 | Maize | plastid | 21.1 | 22.46 |
| Zm00001d052154_P001 | Maize | mitochondrion | 20.52 | 22.33 |
| Zm00001d018190_P001 | Maize | mitochondrion | 21.39 | 22.22 |
| Zm00001d012564_P001 | Maize | mitochondrion | 21.39 | 21.39 |
| Zm00001d011076_P001 | Maize | plastid | 23.7 | 21.19 |
| Zm00001d037167_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 20.81 | 21.18 |
| Zm00001d031273_P001 | Maize | cytosol, plastid | 16.76 | 20.07 |
| Zm00001d051736_P001 | Maize | cytosol | 17.92 | 18.79 |
| Zm00001d046663_P001 | Maize | cytosol | 14.16 | 16.44 |
| Zm00001d053704_P001 | Maize | cytosol | 16.18 | 15.73 |
Protein Annotations
| EMBL:BT066953 | EMBL:BT088321 | EnsemblPlants:Zm00001d040445_P001 | EnsemblPlants:Zm00001d040445_T001 | EnsemblPlantsGene:Zm00001d040445 | EntrezGene:100383341 |
| Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44576 |
| PANTHER:PTHR44576:SF5 | PFAM:PF13639 | PFAM:PF14369 | PFscan:PS50089 | ProteinID:ONM31377.1 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000195CB5C | UniProt:C0PF84 | MapMan:35.1 | : |
Description
RING/U-box superfamily protein
Coordinates
chr3:+:43699969..43701009
Molecular Weight (calculated)
37007.6 Da
IEP (calculated)
4.692
GRAVY (calculated)
-0.538
Length
346 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEQAGVGRY WCHMCAAAVS PAEGEVEMKC PFCHSGFLEE METARGAATD DGDGDGAVAQ VHPGADRPSS IWAHAILSTV DSSARRRRNR RQQEAASDVY
101: DWNDPEFSLR RRRVTAFLRL LHELRDRQLQ RLESAAGVAL EGDQLTPFGR SLFIGAAGGE HGVALGDYFL GPSLDALVQQ LAENDAARHG TPPAKKEAVE
201: AMPTVEIAGG NDDDDAASCP VCLEDYAPGE RAREMPCRHR FHGNCIVPWL EMHSSCPVCR FQLPATDDKS SCSGGDGGFV SVDADREGSD NGGGDGRASS
301: PGNAELAEAE ESGRRLPPSL QWLNSLFSPS AQSSGSGGSS SHHWEN
101: DWNDPEFSLR RRRVTAFLRL LHELRDRQLQ RLESAAGVAL EGDQLTPFGR SLFIGAAGGE HGVALGDYFL GPSLDALVQQ LAENDAARHG TPPAKKEAVE
201: AMPTVEIAGG NDDDDAASCP VCLEDYAPGE RAREMPCRHR FHGNCIVPWL EMHSSCPVCR FQLPATDDKS SCSGGDGGFV SVDADREGSD NGGGDGRASS
301: PGNAELAEAE ESGRRLPPSL QWLNSLFSPS AQSSGSGGSS SHHWEN
001: MEEAVVTRYW CHMCSQTVNP VMEAEIKCPF CQSGFVEEME DDDDHDSSDP ADVRANNSLW APILMELMND PVRRRRNQSV ESVEDNQNEV QTENNEDDGE
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S
Arabidopsis Description
At1g55530/T5A14_7 [Source:UniProtKB/TrEMBL;Acc:Q9ZVU8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.