Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol, nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER89401 | Sorghum | mitochondrion, nucleus | 80.29 | 81.74 |
| TraesCS7D01G170800.1 | Wheat | mitochondrion | 56.76 | 60.31 |
| HORVU0Hr1G019650.1 | Barley | mitochondrion | 56.18 | 60.25 |
| TraesCS7A01G169600.1 | Wheat | cytosol, mitochondrion | 56.47 | 60.19 |
| TraesCS7B01G074800.1 | Wheat | mitochondrion | 56.76 | 59.94 |
| Zm00001d018190_P001 | Maize | mitochondrion | 49.12 | 50.15 |
| Zm00001d052154_P001 | Maize | mitochondrion | 46.47 | 49.69 |
| GSMUA_Achr7P13060_001 | Banana | mitochondrion | 33.24 | 45.94 |
| VIT_12s0034g01400.t01 | Wine grape | endoplasmic reticulum, mitochondrion, nucleus, plastid | 28.24 | 36.78 |
| CDX74533 | Canola | cytosol | 30.0 | 34.93 |
| VIT_18s0001g03270.t01 | Wine grape | nucleus | 32.65 | 33.33 |
| PGSC0003DMT400002370 | Potato | cytosol | 31.18 | 32.82 |
| CDY01669 | Canola | plastid | 30.88 | 32.51 |
| Solyc11g012950.1.1 | Tomato | cytosol | 31.76 | 32.43 |
| KRH64713 | Soybean | nucleus | 33.24 | 32.1 |
| AT1G60360.1 | Thale cress | nucleus | 30.59 | 31.8 |
| Bra028173.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 30.0 | 31.38 |
| Zm00001d047476_P001 | Maize | mitochondrion | 24.71 | 28.77 |
| Zm00001d047824_P001 | Maize | plastid | 22.65 | 27.7 |
| Zm00001d028590_P001 | Maize | plastid | 22.65 | 27.7 |
| PGSC0003DMT400061055 | Potato | extracellular | 23.53 | 26.85 |
| Solyc01g104260.2.1 | Tomato | mitochondrion | 23.53 | 26.67 |
| Zm00001d045625_P001 | Maize | cytosol | 23.82 | 26.13 |
| KRH10441 | Soybean | mitochondrion | 24.41 | 25.86 |
| KRH44018 | Soybean | mitochondrion | 23.82 | 25.55 |
| Zm00001d035677_P001 | Maize | plastid | 24.41 | 23.85 |
| Zm00001d043183_P001 | Maize | plastid | 22.06 | 23.08 |
| Zm00001d011076_P001 | Maize | plastid | 26.18 | 23.0 |
| Zm00001d013971_P001 | Maize | cytosol, mitochondrion, plastid, vacuole | 25.59 | 22.6 |
| Zm00001d032646_P001 | Maize | cytosol | 24.71 | 22.4 |
| VIT_12s0034g01390.t01 | Wine grape | mitochondrion | 29.41 | 22.17 |
| Zm00001d012564_P001 | Maize | mitochondrion | 22.35 | 21.97 |
| Zm00001d040445_P001 | Maize | nucleus | 21.18 | 20.81 |
| Zm00001d047560_P001 | Maize | cytosol | 18.82 | 20.71 |
| Zm00001d008237_P001 | Maize | nucleus | 21.18 | 20.63 |
| Zm00001d038528_P001 | Maize | cytosol | 19.12 | 19.52 |
| Zm00001d031273_P001 | Maize | cytosol, plastid | 16.47 | 19.38 |
| Zm00001d010635_P001 | Maize | nucleus | 17.65 | 19.23 |
| Zm00001d051736_P001 | Maize | cytosol | 17.94 | 18.48 |
| Zm00001d046663_P001 | Maize | cytosol | 16.18 | 18.46 |
| Zm00001d013005_P002 | Maize | nucleus | 17.94 | 16.44 |
| Zm00001d053704_P001 | Maize | cytosol | 14.12 | 13.48 |
Protein Annotations
| EntrezGene:103631341 | Gene3D:3.30.40.10 | MapMan:35.1 | UniProt:A0A1D6LVA1 | ProteinID:AQK83197.1 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13639 | PFAM:PF14369 |
| PFscan:PS50089 | PANTHER:PTHR44290 | PANTHER:PTHR44290:SF4 | SMART:SM00184 | SUPFAM:SSF57850 | TMHMM:TMhelix |
| UniParc:UPI0002212696 | EnsemblPlantsGene:Zm00001d037167 | EnsemblPlants:Zm00001d037167_P001 | EnsemblPlants:Zm00001d037167_T001 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
Putative RING zinc finger domain superfamily protein
Coordinates
chr6:-:114642767..114643789
Molecular Weight (calculated)
36606.3 Da
IEP (calculated)
4.971
GRAVY (calculated)
-0.386
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTGAGAGGG GDAVRRPRRR TWRLYWCYVC GRAVRAISYP ASEVFCPRCF GRFLHEIDLP APRPVVPPPD QFFQPPFLPH EGPRRWVIYT GATDARDDPL
101: ADTGAPLPRR RRRVPSPPPP GPGPATRRPD EDDDVDAPLP LPPPPPPLPP AVVGWDEFFA GPNGLNALIE RLTQDDRPGP PPAPESAIES LPTVQVSPAH
201: LSDGSQCPVC KEEFEIGEAA RELPCKHAYH TDCIVPWLRL HNSCPVCRQE LPQPADGGSQ DAAREEGSGE TEAPPAPGPL VMAGWAPLAW LALPRGPDGD
301: GLARNEPDDG DARRSGVCAP AILQSFAVVA ACFFILSFLV
101: ADTGAPLPRR RRRVPSPPPP GPGPATRRPD EDDDVDAPLP LPPPPPPLPP AVVGWDEFFA GPNGLNALIE RLTQDDRPGP PPAPESAIES LPTVQVSPAH
201: LSDGSQCPVC KEEFEIGEAA RELPCKHAYH TDCIVPWLRL HNSCPVCRQE LPQPADGGSQ DAAREEGSGE TEAPPAPGPL VMAGWAPLAW LALPRGPDGD
301: GLARNEPDDG DARRSGVCAP AILQSFAVVA ACFFILSFLV
001: MSLSQPITRT DSAPNGAFRT FGLYWCYHCD RMVRIASSNP SEIACPRCLR QFVVEIETRQ RPRFTFNHAT PPFDASPEAR LLEALSLMFE PATIGRFGAD
101: PFLRARSRNI LEPESRPRPQ HRRRHSLDNV NNGGLPLPRR TYVILRPNNP TSPLGNIIAP PNQAPPRHVN SHDYFTGASS LEQLIEQLTQ DDRPGPPPAS
201: EPTINSLPSV KITPQHLTND MSQCTVCMEE FIVGGDATEL PCKHIYHKDC IVPWLRLNNS CPICRRDLPL VNTVAESRER SNPIRQDMPE RRRPRWMQLG
301: NIWPFRARYQ RVSPEETANQ NPRDNRS
101: PFLRARSRNI LEPESRPRPQ HRRRHSLDNV NNGGLPLPRR TYVILRPNNP TSPLGNIIAP PNQAPPRHVN SHDYFTGASS LEQLIEQLTQ DDRPGPPPAS
201: EPTINSLPSV KITPQHLTND MSQCTVCMEE FIVGGDATEL PCKHIYHKDC IVPWLRLNNS CPICRRDLPL VNTVAESRER SNPIRQDMPE RRRPRWMQLG
301: NIWPFRARYQ RVSPEETANQ NPRDNRS
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:O80757]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.