Factsheet for Zm00001d032646_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 1
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013971_P001	Maize	cytosol, mitochondrion, plastid, vacuole	87.2	84.94
TraesCS1D01G159200.1	Wheat	cytosol, mitochondrion, plastid, vacuole	69.6	70.54
TraesCS1A01G162400.1	Wheat	cytosol, mitochondrion, plastid, vacuole	69.33	70.27
TraesCS1B01G179000.1	Wheat	cytosol, mitochondrion, plastid, vacuole	69.07	70.19
HORVU1Hr1G043220.1	Barley	cytosol, mitochondrion, plastid, vacuole	68.53	70.03
Os10t0487400-01	Rice	mitochondrion, nucleus, plastid, vacuole	66.13	67.03
GSMUA_Achr5P19380_001	Banana	plastid	24.27	47.64
Zm00001d045625_P001	Maize	cytosol	34.67	41.94
Zm00001d047476_P001	Maize	mitochondrion	24.53	31.51
Zm00001d047824_P001	Maize	plastid	21.33	28.78
Zm00001d028590_P001	Maize	plastid	21.33	28.78
Zm00001d047560_P001	Maize	cytosol	22.93	27.83
Zm00001d035677_P001	Maize	plastid	25.6	27.59
Zm00001d040445_P001	Maize	nucleus	24.0	26.01
Zm00001d046663_P001	Maize	cytosol	20.27	25.5
Zm00001d010635_P001	Maize	nucleus	21.07	25.32
Zm00001d043183_P001	Maize	plastid	21.87	25.23
Zm00001d038528_P001	Maize	cytosol	22.13	24.92
Zm00001d037167_P001	Maize	cytosol, mitochondrion, nucleus, plastid	22.4	24.71
Zm00001d008237_P001	Maize	nucleus	22.93	24.64
Zm00001d052154_P001	Maize	mitochondrion	20.8	24.53
Zm00001d011076_P001	Maize	plastid	25.07	24.29
Zm00001d018190_P001	Maize	mitochondrion	21.07	23.72
Zm00001d012564_P001	Maize	mitochondrion	21.87	23.7
Zm00001d031273_P001	Maize	cytosol, plastid	17.6	22.84
Zm00001d013005_P002	Maize	nucleus	21.33	21.56
Zm00001d051736_P001	Maize	cytosol	18.4	20.91
Zm00001d053704_P001	Maize	cytosol	14.93	15.73

Protein Annotations

EMBL:EU973741	EnsemblPlants:Zm00001d032646_P001	EnsemblPlants:Zm00001d032646_T001	EnsemblPlantsGene:Zm00001d032646	EntrezGene:100285755	Gene3D:3.30.40.10
InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR44679
PANTHER:PTHR44679:SF2	PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	ProteinID:ONM05629.1	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000182F9B8	UniProt:B6U926	MapMan:35.1	:

Description

RHC1A

Coordinates

chr1:-:233067573..233068723

Molecular Weight (calculated)

39214.5 Da

IEP (calculated)

4.579

GRAVY (calculated)

-0.309

Length

375 amino acids

Sequence
(BLAST)

001: MSTPAAAAKQ YFCYQCNRTV LIAASAVAAG ELSCPECHGN FLEEVTIPAP TFIQLPFPFA STTIPTASTA PRPAPAAGTG RPPSFSSSSA ATSRSEPRYI
101: SSILNSFVGP GEQPNRISGS SIRFAPGTAT HRNEPEPFDP VMFFQNYIQS LVEGGANIQV LFDDASASLG SGPGLGRLGG ASFGDYFVGP GLEQLIEQLA
201: ENDPNRYGTP PAAKSALSSL PDVVVTHTMV AAAEGAECAV CKEDFSPGEV AKQMPCNHIY HTDCIMPWLE LHNSCPICRF ELPTDDPDYE VRKGSNSQQA
301: VGIAAAASGS STAAEGQMER QENPRVVERR FNVSLPWPFS GLGGQTSQQD GNSGGSGSNS QGSGSQDGGP PSSKN

Best Arabidopsis Sequence Match ( AT3G19950.2 )
(BLAST)

001: MGFSPKSVII VSELESATYD ITENYFSLSS DGSFLPSSSR FFCFVVSLSR SEKFAESVMS SGVNSTGSAA AAPEVDKMFF CYQCNQTVTI SISSSADPFC
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQQ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.