Factsheet for Zm00001d038528_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010635_P001	Maize	nucleus	69.67	74.36
KXG22238	Sorghum	plastid	86.19	73.78
Os05t0488800-01	Rice	nucleus	68.77	70.9
TraesCS1D01G305300.1	Wheat	nucleus	67.87	68.07
TraesCS1B01G316300.1	Wheat	nucleus	67.27	67.47
HORVU1Hr1G068950.2	Barley	golgi	72.37	62.44
GSMUA_Achr11P...	Banana	nucleus	33.93	41.85
CDY46577	Canola	nucleus	35.74	40.89
CDY26096	Canola	nucleus	34.53	39.12
CDY10554	Canola	cytosol	34.83	38.03
AT3G13430.2	Thale cress	nucleus	35.44	37.46
Bra027436.1-P	Field mustard	nucleus	33.93	36.57
CDY43991	Canola	nucleus	33.93	36.57
KRG97316	Soybean	nucleus	37.24	36.05
Bra037109.1-P	Field mustard	nucleus	36.04	35.93
Bra030854.1-P	Field mustard	nucleus	33.63	35.9
CDY08249	Canola	cytosol	36.04	35.82
CDY56022	Canola	nucleus	33.63	35.78
CDY56080	Canola	cytosol	30.33	35.56
VIT_06s0004g00120.t01	Wine grape	nucleus	39.04	35.33
Bra002823.1-P	Field mustard	nucleus	36.94	34.94
CDY32791	Canola	nucleus	36.94	34.94
AT1G55530.2	Thale cress	nucleus	36.64	34.76
AT5G56340.1	Thale cress	nucleus	40.84	34.34
CDX92768	Canola	nucleus	31.53	33.98
PGSC0003DMT400046527	Potato	nucleus	36.64	33.89
CDY42740	Canola	nucleus	32.13	33.23
Bra019109.1-P	Field mustard	nucleus	31.83	32.92
Zm00001d013005_P002	Maize	nucleus	36.64	32.88
Bra037999.1-P	Field mustard	nucleus	28.53	32.76
CDY50031	Canola	cytosol	28.53	32.76
CDX89343	Canola	cytosol, mitochondrion	34.53	32.67
CDX92770	Canola	nucleus	31.53	32.41
Zm00001d047560_P001	Maize	cytosol	29.73	32.04
AT4G26400.1	Thale cress	nucleus	34.23	32.02
Bra026444.1-P	Field mustard	nucleus	35.14	31.54
CDY56081	Canola	nucleus	21.92	30.54
Bra011215.1-P	Field mustard	cytosol	20.72	29.74
CDY28208	Canola	cytosol	20.72	29.74
CDX94342	Canola	mitochondrion, nucleus	34.23	29.46
Solyc01g050040.2.1	Tomato	nucleus	25.83	29.45
Zm00001d040445_P001	Maize	nucleus	30.03	28.9
Zm00001d008237_P001	Maize	nucleus	29.13	27.79
Zm00001d047476_P001	Maize	mitochondrion	23.42	26.71
Zm00001d045625_P001	Maize	cytosol	24.32	26.13
KRH70139	Soybean	nucleus	24.62	25.71
KRH08483	Soybean	cytosol, nucleus, plastid	24.02	24.84
Zm00001d032646_P001	Maize	cytosol	24.92	22.13
Zm00001d035677_P001	Maize	plastid	23.12	22.13
Zm00001d047824_P001	Maize	plastid	18.32	21.94
Zm00001d028590_P001	Maize	plastid	18.32	21.94
Bra028935.1-P	Field mustard	nucleus	37.24	21.83
Zm00001d013971_P001	Maize	cytosol, mitochondrion, plastid, vacuole	24.92	21.56
Zm00001d043183_P001	Maize	plastid	20.42	20.92
Zm00001d052154_P001	Maize	mitochondrion	18.62	19.5
CDY11934	Canola	nucleus	37.54	19.17
Zm00001d011076_P001	Maize	plastid	22.22	19.12
Zm00001d037167_P001	Maize	cytosol, mitochondrion, nucleus, plastid	19.52	19.12
Zm00001d012564_P001	Maize	mitochondrion	19.82	19.08
Zm00001d018190_P001	Maize	mitochondrion	18.92	18.92
CDY23599	Canola	golgi, mitochondrion	34.53	18.88
Zm00001d051736_P001	Maize	cytosol	18.02	18.18
Zm00001d046663_P001	Maize	cytosol	15.92	17.79
Zm00001d031273_P001	Maize	cytosol, plastid	15.02	17.3
Zm00001d053704_P001	Maize	cytosol	15.02	14.04

Protein Annotations

EntrezGene:100191157	Gene3D:3.30.40.10	MapMan:35.1	ProteinID:AQK86832.1	UniProt:B4F7U3	EMBL:BT033181
InterPro:IPR001841	InterPro:IPR013083	PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44576
PANTHER:PTHR44576:SF3	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00017B5FE5	EnsemblPlantsGene:Zm00001d038528	EnsemblPlants:Zm00001d038528_P001
EnsemblPlants:Zm00001d038528_T001	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

RING/U-box superfamily protein

Coordinates

chr6:-:159346413..159347414

Molecular Weight (calculated)

36871.7 Da

IEP (calculated)

3.875

GRAVY (calculated)

-0.679

Length

333 amino acids

Sequence
(BLAST)

001: MTEAAVTRYW CHGCVRVVEE AMGEEIKCPF CGGGFIEEMI GEEFDGLASQ QSERDSSQWG ASNNPFEQPR AEADSEDEED DDDYDDDIGR AFESFIRRHG
101: RPSALRRAFD SIQDDLRADR DSDFSILINA FNQALALQRS VLDADEARDD QGGSSNDDGL MEEYVLGAGL TLLLQYLTEN DPSQYGTPPA NKEAVDALPT
201: VQIAEAVSCS VCLDDLELGS QAKQMPCEHK FHSPCILPWL ELHSSCPVCR FELPSEETED LDEPSNVDRT ENTHEEVRAD GPEDDSESSN RAWALVPWFS
301: GLFSTPEPQT VRGAFTDQQT RSTSGTNMNA GES

Best Arabidopsis Sequence Match ( AT1G55530.2 )
(BLAST)

001: MEEAVVTRYW CHMCSQTVNP VMEAEIKCPF CQSGFVEEME DDDDHDSSDP ADVRANNSLW APILMELMND PVRRRRNQSV ESVEDNQNEV QTENNEDDGE
101: NDLDWQLQEI LRRRRRHSAA VLQLLQGIRA GLSVESESTG NGGNNPGRVI LINTSNQTIT VQNSADMDSV PAGSLGDYFI GPGFEMLLQR LAENDPNRYG
201: TPPAKKEAVE ALATVKIEET LQCSVCLDDF EIGTEAKLMP CTHKFHSDCL LPWLELHSSC PVCRYQLPAD EAKTDSVTTT SDNNGSSSAS ATTSHGAENS
301: DGNRRQEEEE EEEEEEEEEN ENNDGSGFSI PWPFSTLFSS SQDSNAPTDS S

Arabidopsis Description

At1g55530/T5A14_7 [Source:UniProtKB/TrEMBL;Acc:Q9ZVU8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.