Factsheet for Zm00001d043183_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG33564	Sorghum	mitochondrion	82.77	89.07
Zm00001d012564_P001	Maize	mitochondrion	87.08	81.79
Os01t0802000-01	Rice	nucleus	64.62	63.83
TraesCS3D01G324300.1	Wheat	mitochondrion	66.46	63.16
TraesCS3B01G361000.1	Wheat	cytosol	65.54	62.1
TraesCS3A01G330900.1	Wheat	mitochondrion	66.15	53.35
Zm00001d047476_P001	Maize	mitochondrion	39.08	43.49
Zm00001d045625_P001	Maize	cytosol	24.92	26.13
Zm00001d047824_P001	Maize	plastid	22.15	25.9
Zm00001d028590_P001	Maize	plastid	22.15	25.9
Zm00001d047560_P001	Maize	cytosol	22.46	23.62
Zm00001d052154_P001	Maize	mitochondrion	23.08	23.58
Zm00001d018190_P001	Maize	mitochondrion	23.69	23.12
Zm00001d035677_P001	Maize	plastid	24.0	22.41
Zm00001d037167_P001	Maize	cytosol, mitochondrion, nucleus, plastid	23.08	22.06
Zm00001d032646_P001	Maize	cytosol	25.23	21.87
Zm00001d040445_P001	Maize	nucleus	22.46	21.1
Zm00001d013971_P001	Maize	cytosol, mitochondrion, plastid, vacuole	24.92	21.04
Zm00001d010635_P001	Maize	nucleus	20.0	20.83
Zm00001d011076_P001	Maize	plastid	24.62	20.67
Zm00001d008237_P001	Maize	nucleus	22.15	20.63
Zm00001d038528_P001	Maize	cytosol	20.92	20.42
Zm00001d013005_P002	Maize	nucleus	19.69	17.25
Zm00001d046663_P001	Maize	cytosol	15.38	16.78
Zm00001d051736_P001	Maize	cytosol	16.62	16.36
Zm00001d031273_P001	Maize	cytosol, plastid	13.54	15.22
Zm00001d053704_P001	Maize	cytosol	14.77	13.48

Protein Annotations

EntrezGene:100194242	Gene3D:3.30.40.10	MapMan:35.1	UniProt:B4FHZ7	EMBL:BT036735	EMBL:BT062816
GO:GO:0003674	GO:GO:0003824	GO:GO:0016874	InterPro:IPR001841	InterPro:IPR013083	ProteinID:ONM37177.1
PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44290	PANTHER:PTHR44290:SF2	SMART:SM00184
SUPFAM:SSF57850	UniParc:UPI00017B6E60	EnsemblPlantsGene:Zm00001d043183	EnsemblPlants:Zm00001d043183_P001	EnsemblPlants:Zm00001d043183_T001	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

Probable E3 ubiquitin-protein ligase RHC1A

Coordinates

chr3:-:190815534..190816511

Molecular Weight (calculated)

36351.7 Da

IEP (calculated)

6.701

GRAVY (calculated)

-0.649

Length

325 amino acids

Sequence
(BLAST)

001: MSNRATHWCY ACRRPIRLRG QDIACPNCND GFIQEISEMG GILNTYGLIE PDFEERRARR FGMMDAMSSL MRQRMEEMGR DGLFDIRGRQ GTGTEYGRRP
101: TAVPTLVFGG IPSPGVDSGD VNVVLRGGRR VGAAQPNFSS LVVGPSLEAL FEQLLLQNNR QGPAPAPQSA IDSMPVVKIN RRHLDDDPQC AVCKDKFEVG
201: AEAREMPCKH LYHTDCIIPW LVQHNSCPVC RHPLPSQRSG STSSARPSAY YNEAADPPGV TRADLEPAPR DGGRESQERR RSFSFLWPFG PSSSRSSSYQ
301: YEQNVDEPAV YDPNQIAYSE WHYDH

Best Arabidopsis Sequence Match ( AT2G40830.2 )
(BLAST)

001: MSSSRNTHWC HRCQRAVRLH GQEPVCFYCG GGFVEELDMA QASPFDMFRS HRGVVERDQT FDLMDAFSVF MRNRLAERSH DREIRGRTIS SGPENFPGLA
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY

Arabidopsis Description

RHC1AProbable E3 ubiquitin-protein ligase RHC1A [Source:UniProtKB/Swiss-Prot;Acc:O22197]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.