Factsheet for Os01t0802000-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043183_P001	Maize	plastid	63.83	64.62
TraesCS3D01G324300.1	Wheat	mitochondrion	66.57	64.04
TraesCS3B01G361000.1	Wheat	cytosol	66.26	63.56
KXG33564	Sorghum	mitochondrion	58.05	63.24
Zm00001d012564_P001	Maize	mitochondrion	61.09	58.09
TraesCS3A01G330900.1	Wheat	mitochondrion	65.35	53.35
Os05t0495000-00	Rice	mitochondrion	42.86	49.3
Os03t0351800-01	Rice	nucleus	37.39	43.46
Os06t0633500-01	Rice	cytosol, nucleus	10.33	27.42
Os03t0271600-01	Rice	plastid	20.97	24.73
Os02t0767600-00	Rice	mitochondrion	23.71	23.78
Os03t0324900-01	Rice	cytosol	21.88	22.5
Os10t0487400-01	Rice	mitochondrion, nucleus, plastid, vacuole	24.01	21.35
Os06t0101300-01	Rice	nucleus	21.88	21.3
Os05t0488800-01	Rice	nucleus	20.67	21.05
Os05t0110000-01	Rice	mitochondrion	20.97	20.72
Os01t0972000-01	Rice	nucleus	20.67	20.36
Os03t0812200-01	Rice	nucleus	22.8	20.33
Os01t0276600-01	Rice	nucleus	20.06	20.06
Os08t0487500-01	Rice	plastid	14.89	18.08
Os02t0727700-01	Rice	cytosol, nucleus, plastid	15.5	16.4
Os02t0191500-01	Rice	nucleus	14.59	12.8
Os11t0119200-01	Rice	nucleus	17.93	12.02
Os12t0118700-01	Rice	nucleus	17.63	11.62

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EMBL:AK103314	ProteinID:BAD68141.1	ProteinID:BAF06457.2	ProteinID:BAS74805.1
GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0043161	GO:GO:0061630
InterPro:IPR001841	InterPro:IPR013083	EnsemblPlantsGene:Os01g0802000	EnsemblPlants:Os01t0802000-01	PFAM:PF13639	PFAM:PF14369
PFscan:PS50089	PANTHER:PTHR44290	PANTHER:PTHR44290:SF2	UniProt:Q5VQY5	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI0000457D97	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

RING finger protein OsRFPH2-12, RING-H2 protein 12Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0802000-01)

Coordinates

chr1:+:33968744..33970803

Molecular Weight (calculated)

36841.0 Da

IEP (calculated)

6.594

GRAVY (calculated)

-0.665

Length

329 amino acids

Sequence
(BLAST)

001: MPNRATHWCY ACRRPIRVSG QDITCPNCND GFIQEISEIG GSLNTYGIFD PSFDERRDRS FGMVEAMSDL MRQRMAEMGR NRVLDFHGTR GASSHQGRQP
101: TVRPMLIFGS NAPDRVSSSS EEADILLRQG RRIGADRPNF SRFLVGPSLE ALFEQLLLHN NRQGPPPAPQ SAIDSMPVVK INLRHLRDDP HCPVCTDKFE
201: VGTEAREMPC KHLYHAECII PWLVQHNSCP VCRHPLPSSS HRSGSTRSSS THSNEAISHG VARSDADPVP VARSDDSRNH EMHGSFSFLW PFDSPTPDSS
301: SYTHEGGVGE PTVHDDAGQM TYSEWHYDY

Best Arabidopsis Sequence Match ( AT2G40830.2 )
(BLAST)

001: MSSSRNTHWC HRCQRAVRLH GQEPVCFYCG GGFVEELDMA QASPFDMFRS HRGVVERDQT FDLMDAFSVF MRNRLAERSH DREIRGRTIS SGPENFPGLA
101: PLLIFGGQVP YRLTGDNAVE ALFNGGSPGI GITRGNTGDY FFGPGLEELF EQLSAGTTRR GPPPAPRSAI DALPTIKIAQ RHLRSSDSNC PVCKDEFELG
201: SEAKQMPCNH IYHSDCIVPW LVQHNSCPVC RQELPSASGP SSSQNRTTPT RNYRSSSSSS SSNSRENGNE RRNPFSSFWP FRSSGSSSSS TQNRGGTRNS
301: DTSDENHNYH QQQHQQSYMG YSGWPFDY

Arabidopsis Description

RHC1AProbable E3 ubiquitin-protein ligase RHC1A [Source:UniProtKB/Swiss-Prot;Acc:O22197]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.