Factsheet for Os01t0972000-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0110000-01	Rice	mitochondrion	50.0	50.15
Zm00001d035677_P001	Maize	plastid	49.1	47.13
TraesCS1A01G029800.1	Wheat	cytosol	55.69	46.62
HORVU1Hr1G004330.14	Barley	cytosol	55.39	46.13
TraesCS1B01G036900.1	Wheat	cytosol	55.09	46.12
TraesCS1D01G030300.1	Wheat	nucleus	55.39	46.02
Os03t0271600-01	Rice	plastid	38.32	45.88
Zm00001d011076_P001	Maize	plastid	51.8	44.7
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	46.71	44.44
EES17560	Sorghum	plastid	53.89	43.58
KRG97885	Soybean	mitochondrion	46.11	43.14
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	49.7	43.01
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	44.01	42.73
KRH10229	Soybean	nucleus	40.12	42.68
KRH24759	Soybean	nucleus	44.91	41.55
KRH30994	Soybean	nucleus	48.8	41.48
KRH23103	Soybean	nucleus	38.92	41.4
Bra005020.1-P	Field mustard	nucleus, plastid	41.92	41.06
CDX74839	Canola	cytosol, plastid	39.82	41.05
CDY20473	Canola	nucleus, plastid	41.02	41.02
KRH29763	Soybean	nucleus	43.41	40.17
PGSC0003DMT400005512	Potato	mitochondrion	45.81	39.64
CDY24951	Canola	nucleus	44.31	39.47
CDY07641	Canola	nucleus	44.01	39.3
Bra000143.1-P	Field mustard	nucleus	44.01	39.2
Solyc04g011610.1.1	Tomato	nucleus	44.91	37.97
PGSC0003DMT400016233	Potato	nucleus	44.61	37.82
CDY53450	Canola	cytosol	35.03	36.34
AT2G39720.2	Thale cress	nucleus	42.52	35.41
CDY48679	Canola	cytosol, plastid	34.13	34.13
CDY61251	Canola	cytosol	36.83	34.07
CDX99105	Canola	cytosol, plastid	32.93	33.95
Solyc06g005650.2.1	Tomato	extracellular	20.06	33.5
CDY33046	Canola	plastid	33.83	33.04
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	36.83	32.98
CDX80258	Canola	plastid	35.03	32.96
Bra020313.1-P	Field mustard	plastid	38.32	32.9
KRH15082	Soybean	nucleus	37.43	32.72
Bra006709.1-P	Field mustard	plastid	38.02	32.32
CDX88709	Canola	cytosol, plastid	38.02	32.23
KRH73053	Soybean	nucleus	37.43	31.97
Bra002559.1-P	Field mustard	plastid	37.43	31.49
Os06t0633500-01	Rice	cytosol, nucleus	11.38	30.65
AT3G46620.1	Thale cress	cytosol, plastid	36.23	30.63
AT5G59550.2	Thale cress	nucleus, plastid	38.02	24.8
Os03t0351800-01	Rice	nucleus	20.06	23.67
Os05t0495000-00	Rice	mitochondrion	20.06	23.43
Os03t0324900-01	Rice	cytosol	20.36	21.25
Os06t0101300-01	Rice	nucleus	21.26	21.01
Os01t0802000-01	Rice	nucleus	20.36	20.67
Os01t0276600-01	Rice	nucleus	20.36	20.67
Os02t0767600-00	Rice	mitochondrion	20.06	20.43
Os08t0487500-01	Rice	plastid	14.67	18.08
Os10t0487400-01	Rice	mitochondrion, nucleus, plastid, vacuole	19.76	17.84
Os02t0727700-01	Rice	cytosol, nucleus, plastid	15.87	17.04
Os03t0812200-01	Rice	nucleus	18.56	16.8
Os05t0488800-01	Rice	nucleus	15.87	16.41
Os02t0191500-01	Rice	nucleus	14.37	12.8
Os11t0119200-01	Rice	nucleus	16.47	11.2
Os12t0118700-01	Rice	nucleus	16.47	11.02

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:4326393	EMBL:AK106003	ProteinID:BAD87366.1	ProteinID:BAF07453.1
ProteinID:BAS76435.1	InterPro:DUF1117	ProteinID:EAZ14993.1	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016740
GO:GO:0019538	GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	EnsemblPlantsGene:Os01g0972000
EnsemblPlants:Os01t0972000-01	PFAM:PF06547	PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44274
PANTHER:PTHR44274:SF3	UniProt:Q5JME3	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00004C2960	RefSeq:XP_015640825.1
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RING finger protein OsRFPH2-3, RING-H2 protein 3Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0972000-01)

Coordinates

chr1:+:42884953..42886230

Molecular Weight (calculated)

35891.7 Da

IEP (calculated)

6.664

GRAVY (calculated)

-0.363

Length

334 amino acids

Sequence
(BLAST)

001: MDDDASSYTY CCHSCDSFVH PHPHLDAAVL CPHCNAAGFL HDHEMPPAAD HSPFNPPVIV LRRSASPDDA TTFDLLYDDG ASSALRPLFD RLLLRIPSAS
101: DNPNPPASKA AVDSMPTILI GACHLAADSH CAVCKEPFHL AAEAREMPCA HIYHHNCILP WLALHNSCPV CRHRMPTDDH DSTNAAAAQA AAGSSDEDAT
201: TVGTLTIWRL PGGGYAVGRF AAAGGTRAGE RELPVLYTQM DDGGFNGGGG SGSPTMIGWS SRGSRSSQRQ RSIIPRLFRN MFACFRHHDA TADSGDYSSR
301: AGRRSSSSVF TRSLRSQITS WRSEDGHPDA IATR

Best Arabidopsis Sequence Match ( AT3G46620.1 )
(BLAST)

001: MMPNSRSATI TPTTESTTTT TTTTTTLTTS YWCYSCTRFI SVWEDQDANA GVLCPYCNGG FIEEIEDSSN STVAAIPAST PEVRSVEETH RSIIRRRRSN
101: RRTSFNPVIV LHGGGGGGAG ERVENEEGDG ATRERRAYEF YYDDGSGSGL RPLPDSVSEI LMGSGFERLL EQLSQIEASG NGIGRSGNPP ASKSAIESLP
201: RVEISDCHTK AEANCAVCTE VFEAGIEGRE MPCKHIFHGD CIVPWLSIRN SCPVCRFELP SDPIQRSNEE EHAVGMTIWR LPGGGFAVGR FNAGVREGER
301: ILPVVLTEMD GGGLGSNEGP RRISWVRAHE TPEMSRNGGR SGNGGRLRRA VRGMVSFMRR VRPSRGSSNS NVIDLDSDGE TRVMNRSTSL IRRFF

Arabidopsis Description

RDUF1E3 ubiquitin-protein ligase RDUF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNB6]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.