Factsheet for TraesCS1D01G030300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G036900.1	Wheat	cytosol	97.76	98.5
TraesCS1A01G029800.1	Wheat	cytosol	97.26	98.0
HORVU1Hr1G004330.14	Barley	cytosol	92.29	92.52
Os05t0110000-01	Rice	mitochondrion	70.65	85.29
Zm00001d035677_P001	Maize	plastid	63.43	73.28
EES17560	Sorghum	plastid	70.4	68.52
Zm00001d011076_P001	Maize	plastid	64.43	66.93
TraesCS3D01G532300.1	Wheat	cytosol	62.19	64.77
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	52.24	59.83
TraesCS4D01G209500.1	Wheat	plastid	40.8	58.57
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	47.51	55.52
Os01t0972000-01	Rice	nucleus	46.02	55.39
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	52.99	55.18
KRH23103	Soybean	nucleus	42.54	54.46
KRH10229	Soybean	nucleus	42.29	54.14
KRH24759	Soybean	nucleus	47.51	52.91
KRH29763	Soybean	nucleus	46.77	52.08
KRG97885	Soybean	mitochondrion	46.02	51.82
PGSC0003DMT400005512	Potato	mitochondrion	49.01	51.04
Solyc06g005650.2.1	Tomato	extracellular	25.12	50.5
Solyc04g011610.1.1	Tomato	nucleus	48.51	49.37
PGSC0003DMT400016233	Potato	nucleus	48.26	49.24
KRH30994	Soybean	nucleus	48.01	49.11
CDY20473	Canola	nucleus, plastid	40.3	48.5
Bra005020.1-P	Field mustard	nucleus, plastid	40.05	47.21
CDX74839	Canola	cytosol, plastid	37.81	46.91
CDY53450	Canola	cytosol	37.06	46.27
CDX80258	Canola	plastid	40.8	46.2
Bra000143.1-P	Field mustard	nucleus	42.54	45.6
CDY07641	Canola	nucleus	42.29	45.45
CDY24951	Canola	nucleus	41.79	44.8
CDY61251	Canola	cytosol	39.55	44.04
Bra020313.1-P	Field mustard	plastid	42.29	43.7
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	40.55	43.7
Bra006709.1-P	Field mustard	plastid	42.29	43.26
CDX88709	Canola	cytosol, plastid	42.29	43.15
Bra002559.1-P	Field mustard	plastid	42.54	43.07
CDY48679	Canola	cytosol, plastid	35.57	42.81
AT2G39720.2	Thale cress	nucleus	42.29	42.39
CDX99105	Canola	cytosol, plastid	34.08	42.28
CDY33046	Canola	plastid	35.82	42.11
KRH15082	Soybean	nucleus	39.55	41.62
KRH73053	Soybean	nucleus	40.3	41.43
AT3G46620.1	Thale cress	cytosol, plastid	40.05	40.76
AT5G59550.2	Thale cress	nucleus, plastid	42.04	33.01
TraesCS3D01G432800.1	Wheat	mitochondrion	22.14	30.8
TraesCS6D01G309800.1	Wheat	mitochondrion	22.39	28.3
TraesCS7D01G000400.1	Wheat	cytosol	22.89	27.88
TraesCS1D01G159200.1	Wheat	cytosol, mitochondrion, plastid, vacuole	24.88	27.03
TraesCS7D01G170800.1	Wheat	mitochondrion	20.65	25.94
TraesCS3D01G324300.1	Wheat	mitochondrion	21.64	25.44
TraesCS7D01G246300.1	Wheat	plastid	15.92	23.79
TraesCS3D01G192700.1	Wheat	cytosol	20.65	22.55
TraesCS4D01G176700.1	Wheat	cytosol	19.15	22.13
TraesCS1D01G305300.1	Wheat	nucleus	17.91	21.69
TraesCS5D01G480800.1	Wheat	nucleus	21.64	21.53
TraesCS7D01G387300.1	Wheat	cytosol	14.68	18.1
TraesCS6D01G160300.1	Wheat	nucleus	15.42	17.82
TraesCS5D01G146400.1	Wheat	nucleus	17.66	13.98

Protein Annotations

EnsemblPlants:TraesCS1D01G030300.1	EnsemblPlantsGene:TraesCS1D01G030300	Gene3D:3.30.40.10	InterPro:DUF1117	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44274	PANTHER:PTHR44274:SF3	PFAM:PF06547	PFAM:PF13639
PFAM:PF14369	PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	TIGR:cd16667
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:11781532..11783040

Molecular Weight (calculated)

42562.6 Da

IEP (calculated)

6.823

GRAVY (calculated)

-0.416

Length

402 amino acids

Sequence
(BLAST)

001: MDSSPAASAS YWCYSCDRFV RAASSPEGGG DVACPDCGGG FLEEMRRTPP APAYLRRPRA HHANDLRLRR SRRAAAAAAA AASASGGGSG GDRAPFNPVI
101: VLRRSALGAG AAGEDNNGDG DDGALAAASS FELFYDDGAG SGLRPLPESM SDFLMGSGFE RLLGQLAQIE AGGLTRARET PPASKAAVES MPTVAIAASH
201: VAADCHCAVC KEPFELGAEA REMPCAHIYH EDCILPWLQL RNSCPVCRHE MPTDTAAARS QAASAGAEEE TTVGLTIWRL PGGGFAVGRF AGGRRPEERE
301: LPVVYTEMDG GFNHGGAPRR ISWGSRQSRS TERSAIRRVF RNMFACFGRG HSAGSHASSS QMRPEEMTEA SDHSAAFSHG SRSRSMSWRL EDGHAADTMV
401: QR

Best Arabidopsis Sequence Match ( AT3G46620.1 )
(BLAST)

001: MMPNSRSATI TPTTESTTTT TTTTTTLTTS YWCYSCTRFI SVWEDQDANA GVLCPYCNGG FIEEIEDSSN STVAAIPAST PEVRSVEETH RSIIRRRRSN
101: RRTSFNPVIV LHGGGGGGAG ERVENEEGDG ATRERRAYEF YYDDGSGSGL RPLPDSVSEI LMGSGFERLL EQLSQIEASG NGIGRSGNPP ASKSAIESLP
201: RVEISDCHTK AEANCAVCTE VFEAGIEGRE MPCKHIFHGD CIVPWLSIRN SCPVCRFELP SDPIQRSNEE EHAVGMTIWR LPGGGFAVGR FNAGVREGER
301: ILPVVLTEMD GGGLGSNEGP RRISWVRAHE TPEMSRNGGR SGNGGRLRRA VRGMVSFMRR VRPSRGSSNS NVIDLDSDGE TRVMNRSTSL IRRFF

Arabidopsis Description

RDUF1E3 ubiquitin-protein ligase RDUF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNB6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.