Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY24951 | Canola | nucleus | 79.55 | 85.07 |
| CDY07641 | Canola | nucleus | 78.8 | 84.49 |
| Bra000143.1-P | Field mustard | nucleus | 78.55 | 84.0 |
| Os03t0271600-01 | Rice | plastid | 37.91 | 54.48 |
| Zm00001d047824_P001 | Maize | plastid | 36.66 | 52.88 |
| Zm00001d028590_P001 | Maize | plastid | 36.66 | 52.88 |
| EER95109 | Sorghum | plastid | 36.16 | 52.73 |
| GSMUA_Achr7P15040_001 | Banana | mitochondrion | 41.4 | 52.53 |
| TraesCS4D01G209500.1 | Wheat | plastid | 36.66 | 52.5 |
| TraesCS4B01G209100.1 | Wheat | plastid | 36.66 | 52.5 |
| TraesCS4A01G095800.1 | Wheat | cytosol | 36.66 | 52.5 |
| GSMUA_Achr10P... | Banana | mitochondrion | 42.14 | 50.15 |
| GSMUA_AchrUn_... | Banana | mitochondrion, plastid | 43.14 | 49.29 |
| GSMUA_Achr5P07070_001 | Banana | nucleus | 38.4 | 46.81 |
| GSMUA_Achr6P23590_001 | Banana | mitochondrion, nucleus | 39.9 | 46.51 |
| Os05t0110000-01 | Rice | mitochondrion | 38.4 | 46.25 |
| Zm00001d035677_P001 | Maize | plastid | 39.9 | 45.98 |
| GSMUA_Achr2P19140_001 | Banana | mitochondrion | 40.9 | 45.3 |
| TraesCS3D01G532300.1 | Wheat | cytosol | 42.64 | 44.3 |
| KRH73053 | Soybean | nucleus | 42.39 | 43.48 |
| KRH15082 | Soybean | nucleus | 41.15 | 43.19 |
| TraesCS3B01G595200.1 | Wheat | cytosol | 42.89 | 43.11 |
| GSMUA_Achr10P... | Banana | mitochondrion | 43.14 | 43.03 |
| TraesCS1B01G036900.1 | Wheat | cytosol | 42.64 | 42.86 |
| TraesCS1A01G029800.1 | Wheat | cytosol | 42.39 | 42.61 |
| Os01t0972000-01 | Rice | nucleus | 35.41 | 42.52 |
| HORVU1Hr1G004330.14 | Barley | cytosol | 42.39 | 42.39 |
| TraesCS1D01G030300.1 | Wheat | nucleus | 42.39 | 42.29 |
| HORVU7Hr1G055010.1 | Barley | cytosol | 22.94 | 41.63 |
| HORVU4Hr1G060130.1 | Barley | cytosol | 36.41 | 41.48 |
| Zm00001d011076_P001 | Maize | plastid | 39.4 | 40.83 |
| EES17560 | Sorghum | plastid | 41.65 | 40.44 |
| GSMUA_Achr10P... | Banana | nucleus | 27.43 | 39.01 |
| AT3G46620.1 | Thale cress | cytosol, plastid | 37.91 | 38.48 |
| HORVU3Hr1G041030.1 | Barley | mitochondrion | 36.91 | 38.24 |
| HORVU3Hr1G115000.7 | Barley | mitochondrion | 35.41 | 36.22 |
| AT5G59550.2 | Thale cress | nucleus, plastid | 41.15 | 32.23 |
| AT3G56580.1 | Thale cress | mitochondrion | 21.7 | 27.19 |
| AT2G40830.4 | Thale cress | mitochondrion | 21.45 | 26.22 |
| AT1G60360.1 | Thale cress | nucleus | 20.45 | 25.08 |
| AT3G13430.2 | Thale cress | nucleus | 17.71 | 22.54 |
| AT3G19950.2 | Thale cress | cytosol | 21.7 | 22.54 |
| AT5G64920.1 | Thale cress | cytosol | 17.71 | 21.26 |
| AT1G55530.2 | Thale cress | nucleus | 17.46 | 19.94 |
| AT5G56340.1 | Thale cress | nucleus | 19.45 | 19.7 |
| AT4G26400.1 | Thale cress | nucleus | 16.96 | 19.1 |
| AT5G01980.1 | Thale cress | nucleus | 20.95 | 17.04 |
| AT5G08139.1 | Thale cress | cytosol | 13.72 | 14.63 |
| AT3G02340.2 | Thale cress | cytosol | 14.71 | 14.43 |
| AT5G15820.1 | Thale cress | cytosol | 12.22 | 14.08 |
| AT5G60820.1 | Thale cress | cytosol | 13.97 | 13.37 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:818556 | UniProt:A0A178W067 | ProteinID:AAB87121.1 | ProteinID:AEC09711.1 |
| EMBL:AF079186 | ProteinID:ANM62301.1 | ArrayExpress:AT2G39720 | EnsemblPlantsGene:AT2G39720 | RefSeq:AT2G39720 | TAIR:AT2G39720 |
| RefSeq:AT2G39720-TAIR-G | EnsemblPlants:AT2G39720.2 | EMBL:AY074579 | EMBL:AY086492 | EMBL:AY094016 | InterPro:DUF1117 |
| GO:GO:0000209 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 |
| GO:GO:0042787 | GO:GO:0043161 | GO:GO:0046872 | GO:GO:0061630 | InterPro:IPR001841 | InterPro:IPR013083 |
| RefSeq:NP_001318385.1 | RefSeq:NP_030517.1 | UniProt:O22283 | ProteinID:OAP11486.1 | PFAM:PF06547 | PFAM:PF13639 |
| PFAM:PF14369 | PFscan:PS50089 | PANTHER:PTHR44274 | PANTHER:PTHR44274:SF3 | Symbol:RHC2A | SMART:SM00184 |
| SUPFAM:SSF57850 | UniParc:UPI00000A67F4 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
RHC2AProbable E3 ubiquitin-protein ligase RHC2A [Source:UniProtKB/Swiss-Prot;Acc:O22283]
Coordinates
chr2:-:16566603..16568960
Molecular Weight (calculated)
43111.4 Da
IEP (calculated)
7.135
GRAVY (calculated)
-0.364
Length
401 amino acids
Sequence
(BLAST)
(BLAST)
001: MASGSYWCYS CSRFVWVSDS ISCPDCDGGF LELIQEPLDF TPSDSFTTTT TTQHRSPTRF PPPSSSSSTP SASMHADNSP TPTIVTRTRS NRSPNPVIVL
101: RGSAAAPSSD VVSEGLDRSA FQMYYDDGTD SGLRPLPPSM TEFLLGSGFD RLLDQISQIE LNTNRNLRSC EHPPASKSAI EALPLIEIDP THLLSDSQSH
201: CAVCKENFVL KSSAREMPCN HIYHPDCILP WLAIRNSCPV CRHELPAEDL TDGTGAALTA VTATAEEEED SAAGLTIWRL PGGGFAVGRI PGGWRGGDRM
301: MPVVYTEVDG GRLGDERLPR RVAWGSRRGG RDGGGSRERG GGFAGRIMRL FGCFSGSSGS IAAAAAASSG SGSRIRVTRR TRSFSMFSTA SSSSRRRNWL
401: A
101: RGSAAAPSSD VVSEGLDRSA FQMYYDDGTD SGLRPLPPSM TEFLLGSGFD RLLDQISQIE LNTNRNLRSC EHPPASKSAI EALPLIEIDP THLLSDSQSH
201: CAVCKENFVL KSSAREMPCN HIYHPDCILP WLAIRNSCPV CRHELPAEDL TDGTGAALTA VTATAEEEED SAAGLTIWRL PGGGFAVGRI PGGWRGGDRM
301: MPVVYTEVDG GRLGDERLPR RVAWGSRRGG RDGGGSRERG GGFAGRIMRL FGCFSGSSGS IAAAAAASSG SGSRIRVTRR TRSFSMFSTA SSSSRRRNWL
401: A
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.