Factsheet for GSMUA_Achr10P02430_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P15040_001	Banana	mitochondrion	60.45	76.9
GSMUA_Achr10P...	Banana	mitochondrion	60.7	72.4
GSMUA_Achr5P07070_001	Banana	nucleus	58.46	71.43
GSMUA_Achr2P19140_001	Banana	mitochondrion	61.19	67.96
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	52.74	61.63
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	52.49	60.11
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	56.97	59.33
Os03t0271600-01	Rice	plastid	40.3	58.06
TraesCS4A01G095800.1	Wheat	cytosol	39.8	57.14
TraesCS4B01G209100.1	Wheat	plastid	39.8	57.14
TraesCS4D01G209500.1	Wheat	plastid	39.8	57.14
EER95109	Sorghum	plastid	38.81	56.73
Zm00001d047824_P001	Maize	plastid	38.81	56.12
Zm00001d028590_P001	Maize	plastid	38.81	56.12
KRH10229	Soybean	nucleus	43.53	55.73
KRH23103	Soybean	nucleus	42.79	54.78
KRH24759	Soybean	nucleus	49.01	54.57
KRH29763	Soybean	nucleus	48.26	53.74
KRG97885	Soybean	mitochondrion	47.26	53.22
PGSC0003DMT400005512	Potato	mitochondrion	49.25	51.3
KRH30994	Soybean	nucleus	49.75	50.89
PGSC0003DMT400016233	Potato	nucleus	49.75	50.76
Solyc04g011610.1.1	Tomato	nucleus	49.75	50.63
CDY20473	Canola	nucleus, plastid	40.55	48.8
Solyc06g005650.2.1	Tomato	extracellular	23.88	48.0
Bra005020.1-P	Field mustard	nucleus, plastid	39.55	46.63
CDX74839	Canola	cytosol, plastid	37.56	46.6
CDX80258	Canola	plastid	40.05	45.35
HORVU4Hr1G060130.1	Barley	cytosol	39.55	45.17
Bra000143.1-P	Field mustard	nucleus	41.79	44.8
CDY53450	Canola	cytosol	35.82	44.72
CDY07641	Canola	nucleus	41.54	44.65
CDY24951	Canola	nucleus	41.29	44.27
CDY61251	Canola	cytosol	39.55	44.04
GSMUA_Achr10P...	Banana	nucleus	30.6	43.62
AT2G39720.2	Thale cress	nucleus	43.03	43.14
CDX99105	Canola	cytosol, plastid	34.58	42.9
Bra006709.1-P	Field mustard	plastid	41.79	42.75
Bra020313.1-P	Field mustard	plastid	41.29	42.67
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	39.55	42.63
CDX88709	Canola	cytosol, plastid	41.54	42.39
CDY48679	Canola	cytosol, plastid	34.83	41.92
Bra002559.1-P	Field mustard	plastid	41.04	41.56
CDY33046	Canola	plastid	35.32	41.52
KRH15082	Soybean	nucleus	39.3	41.36
AT3G46620.1	Thale cress	cytosol, plastid	40.05	40.76
KRH73053	Soybean	nucleus	38.56	39.64
GSMUA_Achr8P09890_001	Banana	nucleus	20.65	35.93
GSMUA_Achr9P05060_001	Banana	nucleus	15.67	33.87
GSMUA_Achr5P19380_001	Banana	plastid	15.42	32.46
AT5G59550.2	Thale cress	nucleus, plastid	41.04	32.23
GSMUA_AchrUn_...	Banana	nucleus	19.65	30.62
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	19.65	30.5
GSMUA_Achr7P13060_001	Banana	mitochondrion	18.66	30.49
GSMUA_Achr11P...	Banana	nucleus	19.4	28.89
GSMUA_Achr6P08590_001	Banana	nucleus	20.9	28.67
GSMUA_Achr2P03780_001	Banana	cytosol	23.63	27.07
GSMUA_Achr11P...	Banana	mitochondrion	19.65	26.42
GSMUA_Achr7P18340_001	Banana	nucleus	19.15	25.67
GSMUA_Achr10P...	Banana	nucleus	19.15	25.41
GSMUA_Achr5P07680_001	Banana	nucleus	17.16	23.15
GSMUA_Achr4P02460_001	Banana	nucleus	16.17	15.7
GSMUA_Achr8P24510_001	Banana	cytosol	13.68	13.89
GSMUA_Achr11P...	Banana	cytosol	21.39	11.86
GSMUA_Achr3P06300_001	Banana	cytosol	14.18	10.92

Protein Annotations

EnsemblPlants:GSMUA_Achr10P02430_001	EnsemblPlants:GSMUA_Achr10T02430_001	EnsemblPlantsGene:GSMUA_Achr10G02430_001	Gene3D:3.30.40.10	InterPro:DUF1117	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44274	PFAM:PF06547	PFAM:PF13639
PFAM:PF14369	PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002948FCB
UniProt:M0RES0	MapMan:35.1	:	:	:	:

Description

zinc finger, RING-type, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G02430_001]

Coordinates

chr10:+:7155465..7156916

Molecular Weight (calculated)

45079.1 Da

IEP (calculated)

6.251

GRAVY (calculated)

-0.450

Length

402 amino acids

Sequence
(BLAST)

001: MTTASMYWCY RCSRFVRVRP QDAVVCPDCD GGFLEEAGPL QQSELRFRQN RRAAAGDRSP FNPVIVLRGA SDGDRDEDRS TASNFELYYD DGTAAGLRPL
101: PESISDFLMS SGFDRLLEQF AHIEINGMGH DRGSERPPAS KVAIESMPTI EIVDDHIGKD CHCAICMDVF ELGTEAREMP CKHIYHQDCI FPWLSLRNSC
201: PVCRHEMPTD VQERGSAVAE GDDQAAVTGS EEEMVGLTIW RLPGGGFAVG RFSGGRRAGE REFPVVYTEM DGGFNHSGAP RRISWTSRRS RLRESGGIGR
301: TIRNFFSFFR RSRSASSSSR SIAESDAAFS RGHERGSVFR WRSRRRSINM DGGTDLERIN EIFVTEDTCI IIIAGSMRVI VYPSLYLGRP LQLPYFCNNL
401: ND

Best Arabidopsis Sequence Match ( AT5G59550.2 )
(BLAST)

001: MDPTNSRHGA SFEFSTRRFT LSTFGQNAPS LYVTTVYNSA IIYPVKHSPR VYLPSNPTPL IPLLRIALKT TFSFSHLQTS LSLLWSAILL SSSSQILSPS
101: KKILKMPSTP TTPTTTTPIT ASYWCYSCTR FVSVWADQGT TTVGSVACPH CDGGFIEQIN DSSSAATELT IPASTEVRSI NNNRRSVIRR RRSGRRPSFN
201: PVIVLQGGAG EREEGEEGDA ARDRRAFEFY YDDGSGSGLR PLPDSVSEIL MGSGFERLLE QLSQIEASAT GIGRSGNPPA SKSAIESLPR VEISDCHIGS
301: EANCAVCTEI FETETEAREM PCKHLFHDDC IVPWLSIRNS CPVCRFELPS EPNRRSNNNE EDNAVGMTIW RLPGGGFAVG RFNAAMRDGE RVLPVVLTEM
401: DGGGIGNSQD GPRRISWVRS HGTLESDSNG TGSGSGSGGR LRRMVRGMVS LMRRVRPNRS SSSSSAAIST SSDNLDLNIE VESRVLDRSN SVMRRYFRRN
501: RSNRDSSSSV LH

Arabidopsis Description

zinc finger (C3HC4-type RING finger) family protein [Source:TAIR;Acc:AT5G59550]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.