CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29763	Soybean	nucleus	93.91	93.91
KRH23103	Soybean	nucleus	62.88	72.29
KRH10229	Soybean	nucleus	62.6	71.97
GSMUA_Achr7P15040_001	Banana	mitochondrion	51.25	58.54
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	61.5	57.51
Os03t0271600-01	Rice	plastid	42.66	55.2
TraesCS4A01G095800.1	Wheat	cytosol	42.66	55.0
TraesCS4D01G209500.1	Wheat	plastid	42.66	55.0
TraesCS4B01G209100.1	Wheat	plastid	42.66	55.0
EER95109	Sorghum	plastid	41.55	54.55
Solyc06g005650.2.1	Tomato	extracellular	30.19	54.5
Zm00001d047824_P001	Maize	plastid	41.83	54.32
Zm00001d028590_P001	Maize	plastid	41.55	53.96
GSMUA_Achr10P...	Banana	mitochondrion	50.14	53.71
KRG97885	Soybean	mitochondrion	52.91	53.5
PGSC0003DMT400005512	Potato	mitochondrion	57.06	53.37
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	50.97	52.42
Os05t0110000-01	Rice	mitochondrion	47.92	51.95
KRG99997	Soybean	plastid	44.88	51.92
KRH49133	Soybean	plastid	44.04	51.79
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	49.31	51.74
GSMUA_Achr5P07070_001	Banana	nucleus	46.81	51.37
KRH30994	Soybean	nucleus	55.12	50.64
GSMUA_Achr2P19140_001	Banana	mitochondrion	50.69	50.55
GSMUA_Achr10P...	Banana	mitochondrion	54.57	49.01
TraesCS3D01G532300.1	Wheat	cytosol	52.35	48.96
CDY53450	Canola	cytosol	43.21	48.45
HORVU1Hr1G004330.14	Barley	cytosol	53.74	48.38
TraesCS1A01G029800.1	Wheat	cytosol	53.46	48.37
Zm00001d035677_P001	Maize	plastid	46.54	48.28
TraesCS3B01G595200.1	Wheat	cytosol	53.19	48.12
TraesCS1B01G036900.1	Wheat	cytosol	52.63	47.62
TraesCS1D01G030300.1	Wheat	nucleus	52.91	47.51
HORVU7Hr1G055010.1	Barley	cytosol	28.81	47.06
CDX80258	Canola	plastid	45.43	46.2
Zm00001d011076_P001	Maize	plastid	49.31	45.99
EES17560	Sorghum	plastid	52.35	45.76
CDY61251	Canola	cytosol	45.71	45.71
Os01t0972000-01	Rice	nucleus	41.55	44.91
KRH15082	Soybean	nucleus	47.09	44.5
Bra020313.1-P	Field mustard	plastid	47.92	44.47
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	45.71	44.24
KRH73053	Soybean	nucleus	47.09	43.48
HORVU4Hr1G060130.1	Barley	cytosol	42.38	43.47
Bra002559.1-P	Field mustard	plastid	47.65	43.32
CDX99105	Canola	cytosol, plastid	38.78	43.21
CDY48679	Canola	cytosol, plastid	39.89	43.11
Bra006709.1-P	Field mustard	plastid	46.81	43.0
CDX88709	Canola	cytosol, plastid	46.54	42.64
HORVU3Hr1G041030.1	Barley	mitochondrion	45.71	42.64
AT3G46620.1	Thale cress	cytosol, plastid	46.26	42.28
CDY33046	Canola	plastid	39.89	42.11
HORVU3Hr1G115000.7	Barley	mitochondrion	44.6	41.07
GSMUA_Achr10P...	Banana	nucleus	28.53	36.52
AT5G59550.2	Thale cress	nucleus, plastid	47.37	33.4
KRH71659	Soybean	nucleus	25.21	29.45
KRH33121	Soybean	nucleus	24.65	28.8
KRH18634	Soybean	nucleus	18.01	27.54
KRH18631	Soybean	nucleus	22.71	26.8
KRH14643	Soybean	nucleus	24.1	25.89
KRH36132	Soybean	nucleus	20.22	25.52
KRH38895	Soybean	nucleus	26.04	25.0
KRH09399	Soybean	nucleus	25.48	24.93
KRG90622	Soybean	nucleus	20.5	24.83
KRG97316	Soybean	nucleus	22.99	24.13
KRG90607	Soybean	nucleus	22.16	23.74
KRH36150	Soybean	nucleus	21.88	23.72
KRH10441	Soybean	mitochondrion	21.05	23.68
KRH64713	Soybean	nucleus	22.44	23.01
KRH73496	Soybean	mitochondrion	23.27	22.64
KRH44018	Soybean	mitochondrion	19.67	22.4
KRH08483	Soybean	cytosol, nucleus, plastid	19.94	22.36
KRH70139	Soybean	nucleus	19.67	22.26
KRH18313	Soybean	nucleus	16.9	16.31
KRG93748	Soybean	nucleus, plastid	16.34	15.53
KRH03189	Soybean	nucleus	14.96	15.21
KRH56750	Soybean	cytosol	14.4	15.2
KRH40635	Soybean	nucleus, plastid	22.44	14.7
KRH00522	Soybean	plastid	22.16	14.31

Protein Annotations

EntrezGene:100792874	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02007184	InterPro:DUF1117	EnsemblPlantsGene:GLYMA_12G060700
GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538	GO:GO:0042787	GO:GO:0043161
GO:GO:0061630	UniProt:I1LQN4	InterPro:IPR001841	InterPro:IPR013083	EnsemblPlants:KRH24759	ProteinID:KRH24759
ProteinID:KRH24759.1	PFAM:PF06547	PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44274
PANTHER:PTHR44274:SF3	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000233D014	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:+:4406789..4408502

Molecular Weight (calculated)

40227.2 Da

IEP (calculated)

7.769

GRAVY (calculated)

-0.568

Length

361 amino acids

Sequence
(BLAST)

001: MNLDTQPGTP SYWCYSCTRF VHLSVQATIA CPHCQSGFVE EIRAGAEASP RHRLSPFPDD PLSFRRQGFR RRRREGAGNR SPFNPVIVLR GPGDDSAAAD
101: HDGASTFELF YDDGDGTGLR PLPPTMSEFL LGSGFDRLLE QFAQMEMNGF GRPENPPTSK AAIESMPTVE IGETHVETDA HCAVCKEVFE LHAEARELPC
201: KHIYHSECIL PWLSMRNSCP VCRHELPSDL ETRVPSQIDE EAIGLTIWRL PGGGFAVGRF SGGRRTGESH LPVVYTEMDG GLNTNGGAPR RISRSVRSNR
301: VRESRGFGRV FRNFFSFFGR IGSRNSSSSS EHGSVSRSRS HVSSMFNRSS RRHSRTWVMD D

Best Arabidopsis Sequence Match ( AT5G59550.2 )
(BLAST)

001: MDPTNSRHGA SFEFSTRRFT LSTFGQNAPS LYVTTVYNSA IIYPVKHSPR VYLPSNPTPL IPLLRIALKT TFSFSHLQTS LSLLWSAILL SSSSQILSPS
101: KKILKMPSTP TTPTTTTPIT ASYWCYSCTR FVSVWADQGT TTVGSVACPH CDGGFIEQIN DSSSAATELT IPASTEVRSI NNNRRSVIRR RRSGRRPSFN
201: PVIVLQGGAG EREEGEEGDA ARDRRAFEFY YDDGSGSGLR PLPDSVSEIL MGSGFERLLE QLSQIEASAT GIGRSGNPPA SKSAIESLPR VEISDCHIGS
301: EANCAVCTEI FETETEAREM PCKHLFHDDC IVPWLSIRNS CPVCRFELPS EPNRRSNNNE EDNAVGMTIW RLPGGGFAVG RFNAAMRDGE RVLPVVLTEM
401: DGGGIGNSQD GPRRISWVRS HGTLESDSNG TGSGSGSGGR LRRMVRGMVS LMRRVRPNRS SSSSSAAIST SSDNLDLNIE VESRVLDRSN SVMRRYFRRN
501: RSNRDSSSSV LH

Arabidopsis Description

zinc finger (C3HC4-type RING finger) family protein [Source:TAIR;Acc:AT5G59550]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.