Factsheet for HORVU3Hr1G115000.7

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G532300.1	Wheat	cytosol	72.45	73.58
HORVU3Hr1G041030.1	Barley	mitochondrion	71.94	72.87
TraesCS3B01G595200.1	Wheat	cytosol	73.72	72.43
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	48.72	54.42
HORVU1Hr1G004330.14	Barley	cytosol	54.34	53.12
HORVU7Hr1G055010.1	Barley	cytosol	29.34	52.04
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	41.07	46.8
KRH10229	Soybean	nucleus	37.24	46.5
KRH23103	Soybean	nucleus	36.99	46.18
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	45.41	46.11
KRH29763	Soybean	nucleus	41.58	45.15
KRH24759	Soybean	nucleus	41.07	44.6
KRG97885	Soybean	mitochondrion	40.05	43.98
Solyc04g011610.1.1	Tomato	nucleus	43.62	43.29
PGSC0003DMT400016233	Potato	nucleus	43.37	43.15
CDY20473	Canola	nucleus, plastid	36.73	43.11
KRH30994	Soybean	nucleus	42.86	42.75
PGSC0003DMT400005512	Potato	mitochondrion	41.58	42.23
HORVU4Hr1G060130.1	Barley	cytosol	37.76	42.05
Bra005020.1-P	Field mustard	nucleus, plastid	36.22	41.64
CDX74839	Canola	cytosol, plastid	33.93	41.05
Bra000143.1-P	Field mustard	nucleus	37.5	39.2
CDY24951	Canola	nucleus	37.24	38.93
CDY07641	Canola	nucleus	36.99	38.77
CDY61251	Canola	cytosol	34.95	37.95
CDX80258	Canola	plastid	33.93	37.46
Bra006709.1-P	Field mustard	plastid	36.99	36.9
CDX88709	Canola	cytosol, plastid	36.99	36.8
Bra020313.1-P	Field mustard	plastid	36.48	36.76
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	34.95	36.73
CDY53450	Canola	cytosol	30.1	36.65
CDY48679	Canola	cytosol, plastid	31.12	36.53
CDX99105	Canola	cytosol, plastid	29.85	36.11
Bra002559.1-P	Field mustard	plastid	36.22	35.77
CDY33046	Canola	plastid	31.12	35.67
KRH15082	Soybean	nucleus	34.69	35.6
Solyc06g005650.2.1	Tomato	extracellular	18.11	35.5
AT2G39720.2	Thale cress	nucleus	36.22	35.41
KRH73053	Soybean	nucleus	34.69	34.78
AT3G46620.1	Thale cress	cytosol, plastid	34.69	34.43
AT5G59550.2	Thale cress	nucleus, plastid	36.48	27.93
HORVU3Hr1G096110.1	Barley	mitochondrion	19.13	25.95
HORVU0Hr1G019650.1	Barley	mitochondrion	19.13	23.66
HORVU1Hr1G043220.1	Barley	cytosol, mitochondrion, plastid, vacuole	21.43	22.89
HORVU6Hr1G080320.2	Barley	cytosol, mitochondrion	19.39	22.82
HORVU7Hr1G000850.1	Barley	cytosol, mitochondrion, nucleus	18.62	20.45
HORVU4Hr1G051610.2	Barley	cytosol	17.09	19.42
HORVU3Hr1G039220.1	Barley	cytosol	18.62	19.36
HORVU6Hr1G072430.1	Barley	cytosol	17.6	18.96
HORVU5Hr1G111530.1	Barley	nucleus	18.37	18.09
HORVU1Hr1G068950.2	Barley	golgi	16.07	16.32
HORVU7Hr1G092570.1	Barley	cytosol	15.31	15.67
HORVU6Hr1G034800.1	Barley	cytosol, nucleus	14.54	15.41

Protein Annotations

EnsemblPlants:HORVU3Hr1G115000.7	EnsemblPlantsGene:HORVU3Hr1G115000	Gene3D:3.30.40.10	InterPro:DUF1117	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44274	PANTHER:PTHR44274:SF3	PFAM:PF06547	PFAM:PF13639
PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000B479B38	UniProt:A0A287MSM2
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:-:692265664..692266932

Molecular Weight (calculated)

42382.1 Da

IEP (calculated)

11.368

GRAVY (calculated)

-0.524

Length

392 amino acids

Sequence
(BLAST)

001: RPRHAAALTG RPHALPPPLG WKYSHSPFHS PRSSRRRLKR HHPPPIIPNL PPAPAPPSLL RSAPQLQLQL SWIWSRSKAG AFFSRWIGGR PRLPARRWRR
101: GRRPTGATAA SGPSRRPPSS DAAPLXGLRP LPESMSDFLM GSGFERLLEQ LAQIEAGGFG AVRPCDNPPA SKAAVESMPT VVVAACHVGA DSHCAVCKEA
201: FELGDEAREM PCSHMYHQDC ILPWLALRNS CPVCRHELPT DVPRSAPAGD LGAADDQGSN TGAEAGSEEE TTVGLTIWRL PGGGFAVGRF AGGRRAGERE
301: LPVVYTEVDG GFNNGGAPRR ISWSSRGSRS SQRGIVRRMF DNMFACFGHA HSTNAARASS SRSEWSSVFT RGLRSRSTSW RSQDSHADAI AR

Best Arabidopsis Sequence Match ( AT2G39720.1 )
(BLAST)

001: MASGSYWCYS CSRFVWVSDS ISCPDCDGGF LELIQEPLDF TPSDSFTTTT TTQHRSPTRF PPPSSSSSTP SASMHADNSP TPTIVTRTRS NRSPNPVIVL
101: RGSAAAPSSD VVSEGLDRSA FQMYYDDGTD SGLRPLPPSM TEFLLGSGFD RLLDQISQIE LNTNRNLRSC EHPPASKSAI EALPLIEIDP THLLSDSQSH
201: CAVCKENFVL KSSAREMPCN HIYHPDCILP WLAIRNSCPV CRHELPAEDL TDGTGAALTA VTATAEEEED SAAGLTIWRL PGGGFAVGRI PGGWRGGDRM
301: MPVVYTEVDG GRLGDERLPR RVAWGSRRGG RDGGGSRERG GGFAGRIMRL FGCFSGSSGS IAAAAAASSG SGSRIRVTRR TRSFSMFSTA SSSSRRRNWL
401: A

Arabidopsis Description

RHC2AProbable E3 ubiquitin-protein ligase RHC2A [Source:UniProtKB/Swiss-Prot;Acc:O22283]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.