Factsheet for Bra020313.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
cytosol 2
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48679	Canola	cytosol, plastid	82.26	95.81
CDY53450	Canola	cytosol	76.61	92.55
Bra002559.1-P	Field mustard	plastid	83.8	82.12
Bra006709.1-P	Field mustard	plastid	82.01	81.17
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	66.32	69.17
AT5G59550.2	Thale cress	nucleus, plastid	82.52	62.7
Os03t0271600-01	Rice	plastid	38.56	53.76
GSMUA_Achr7P15040_001	Banana	mitochondrion	43.44	53.48
EER95109	Sorghum	plastid	37.53	53.09
KRH10229	Soybean	nucleus	42.42	52.55
KRH23103	Soybean	nucleus	42.42	52.55
Zm00001d028590_P001	Maize	plastid	37.53	52.52
Zm00001d047824_P001	Maize	plastid	37.53	52.52
TraesCS4D01G209500.1	Wheat	plastid	37.79	52.5
TraesCS4B01G209100.1	Wheat	plastid	37.79	52.5
TraesCS4A01G095800.1	Wheat	cytosol	37.79	52.5
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	44.47	49.29
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	42.67	48.26
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	47.56	47.93
KRH24759	Soybean	nucleus	44.47	47.92
KRH29763	Soybean	nucleus	44.22	47.65
GSMUA_Achr10P...	Banana	mitochondrion	40.87	47.18
Solyc06g005650.2.1	Tomato	extracellular	23.91	46.5
GSMUA_Achr5P07070_001	Banana	nucleus	38.82	45.9
PGSC0003DMT400005512	Potato	mitochondrion	44.99	45.34
Bra005020.1-P	Field mustard	nucleus, plastid	39.59	45.16
Zm00001d035677_P001	Maize	plastid	40.1	44.83
TraesCS3D01G532300.1	Wheat	cytosol	44.22	44.56
Os05t0110000-01	Rice	mitochondrion	38.05	44.44
GSMUA_Achr2P19140_001	Banana	mitochondrion	40.87	43.92
HORVU7Hr1G055010.1	Barley	cytosol	24.94	43.89
TraesCS3B01G595200.1	Wheat	cytosol	44.99	43.86
Bra000143.1-P	Field mustard	nucleus	41.65	43.2
EES17560	Sorghum	plastid	45.24	42.62
TraesCS1A01G029800.1	Wheat	cytosol	43.7	42.61
TraesCS1D01G030300.1	Wheat	nucleus	43.7	42.29
HORVU1Hr1G004330.14	Barley	cytosol	43.44	42.14
TraesCS1B01G036900.1	Wheat	cytosol	43.19	42.11
HORVU4Hr1G060130.1	Barley	cytosol	38.05	42.05
Zm00001d011076_P001	Maize	plastid	41.65	41.86
GSMUA_Achr10P...	Banana	mitochondrion	42.67	41.29
HORVU3Hr1G041030.1	Barley	mitochondrion	38.56	38.76
GSMUA_Achr10P...	Banana	nucleus	28.02	38.65
Os01t0972000-01	Rice	nucleus	32.9	38.32
HORVU3Hr1G115000.7	Barley	mitochondrion	36.76	36.48
Bra001767.1-P	Field mustard	nucleus	17.99	32.71
Bra014684.1-P	Field mustard	nucleus	13.37	27.08
Bra004589.1-P	Field mustard	nucleus	16.97	27.05
Bra030136.1-P	Field mustard	cytosol	16.71	26.86
Bra000207.1-P	Field mustard	mitochondrion, nucleus	21.85	26.81
Bra038246.1-P	Field mustard	nucleus	22.11	26.46
Bra007253.1-P	Field mustard	mitochondrion, nucleus	21.08	26.45
Bra030854.1-P	Field mustard	nucleus	20.82	25.96
Bra037999.1-P	Field mustard	nucleus	19.02	25.52
Bra028173.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	20.82	24.92
Bra035835.1-P	Field mustard	nucleus	20.82	24.77
Bra027436.1-P	Field mustard	nucleus	19.02	23.95
Bra037109.1-P	Field mustard	nucleus	19.54	22.75
Bra002823.1-P	Field mustard	nucleus	20.57	22.73
Bra019109.1-P	Field mustard	nucleus	18.51	22.36
Bra037800.1-P	Field mustard	cytosol	16.97	21.85
Bra011215.1-P	Field mustard	cytosol	12.85	21.55
Bra026444.1-P	Field mustard	nucleus	20.31	21.29
Bra014266.1-P	Field mustard	nucleus	19.79	17.46
Bra013006.1-P	Field mustard	nucleus	16.71	15.59
Bra028935.1-P	Field mustard	nucleus	21.85	14.96
Bra005970.1-P	Field mustard	cytosol	11.05	14.83
Bra009323.1-P	Field mustard	cytosol	13.62	13.98
Bra021467.1-P	Field mustard	nucleus	13.88	13.85
Bra008671.1-P	Field mustard	nucleus	10.03	13.59
Bra023539.1-P	Field mustard	cytoskeleton, cytosol, nucleus	12.34	12.09

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EnsemblPlantsGene:Bra020313	EnsemblPlants:Bra020313.1	EnsemblPlants:Bra020313.1-P	InterPro:DUF1117
InterPro:IPR001841	InterPro:IPR013083	UniProt:M4DUX0	PFAM:PF06547	PFAM:PF13639	PFAM:PF14369
PFscan:PS50089	PANTHER:PTHR44274	PANTHER:PTHR44274:SF3	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002543667
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

AT5G59550 (E=6e-125) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA02:+:6163608..6164777

Molecular Weight (calculated)

41605.4 Da

IEP (calculated)

6.268

GRAVY (calculated)

-0.457

Length

389 amino acids

Sequence
(BLAST)

001: MPSTPPTTPS TTSYWCYSCT RFVSVWAEHG TTEGLACPHC DGGFIEEVTD SSAAAAELAS PASAEVRSIN SSRRSVIRRR RSSRRPSFNP VIVLQGGAGE
101: GEDGDAARDR RAFEFYYDDG SGSGLRPLPD SVSEILMGSG FERLLEQLSQ IEAAGGGLGR SGNPPASKSA IESLPRVEIS DCHITAEANC AVCTEVFEAE
201: TEAREMPCKH IFHEDCIVPW LSIRNSCPVC RFEIPSESNQ QGSSEEGDNA VGMTIWRLPG GGFAVGRFNA AMRDGERVLP VVLTEMDGGG LGGNSEGPRR
301: ISWVRGNGAV ESDGSNGGGS GSGGRLRRMV RGVVSLMRRV RPNRGSNSSS AAVSSSDSEV ESRVMDRSNS VLRRYFGRNR SNRGSSVLH

Best Arabidopsis Sequence Match ( AT5G59550.2 )
(BLAST)

001: MDPTNSRHGA SFEFSTRRFT LSTFGQNAPS LYVTTVYNSA IIYPVKHSPR VYLPSNPTPL IPLLRIALKT TFSFSHLQTS LSLLWSAILL SSSSQILSPS
101: KKILKMPSTP TTPTTTTPIT ASYWCYSCTR FVSVWADQGT TTVGSVACPH CDGGFIEQIN DSSSAATELT IPASTEVRSI NNNRRSVIRR RRSGRRPSFN
201: PVIVLQGGAG EREEGEEGDA ARDRRAFEFY YDDGSGSGLR PLPDSVSEIL MGSGFERLLE QLSQIEASAT GIGRSGNPPA SKSAIESLPR VEISDCHIGS
301: EANCAVCTEI FETETEAREM PCKHLFHDDC IVPWLSIRNS CPVCRFELPS EPNRRSNNNE EDNAVGMTIW RLPGGGFAVG RFNAAMRDGE RVLPVVLTEM
401: DGGGIGNSQD GPRRISWVRS HGTLESDSNG TGSGSGSGGR LRRMVRGMVS LMRRVRPNRS SSSSSAAIST SSDNLDLNIE VESRVLDRSN SVMRRYFRRN
501: RSNRDSSSSV LH

Arabidopsis Description

zinc finger (C3HC4-type RING finger) family protein [Source:TAIR;Acc:AT5G59550]
SUBAcon: [nucleus,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.