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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • plastid 3
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY25360 Canola cytosol, nucleus, plastid 97.25 98.45
CDY24592 Canola nucleus 92.35 94.08
Bra001767.1-P Field mustard nucleus 51.07 78.04
Bra038246.1-P Field mustard nucleus 77.06 77.54
AT3G19950.2 Thale cress cytosol 72.48 61.4
KRH36132 Soybean nucleus 39.45 45.1
PGSC0003DMT400082489 Potato nucleus 43.43 44.1
Solyc04g009170.1.1 Tomato nucleus 41.28 43.69
KRG90622 Soybean nucleus 39.76 43.62
Zm00001d045625_P001 Maize cytosol 41.28 43.55
EER89027 Sorghum nucleus 41.59 42.37
VIT_17s0053g00320.t01 Wine grape plastid 45.57 40.38
Os06t0101300-01 Rice nucleus 41.28 39.94
TraesCS7D01G000400.1 Wheat cytosol 39.14 38.79
TraesCS4A01G499200.1 Wheat cytosol, mitochondrion 39.14 38.21
HORVU7Hr1G000850.1 Barley cytosol, mitochondrion, nucleus 38.23 35.01
Bra004589.1-P Field mustard nucleus 21.1 28.28
Bra000207.1-P Field mustard mitochondrion, nucleus 26.91 27.76
Bra014684.1-P Field mustard nucleus 16.21 27.6
Bra037109.1-P Field mustard nucleus 27.83 27.25
Bra007253.1-P Field mustard mitochondrion, nucleus 25.69 27.1
Bra030854.1-P Field mustard nucleus 25.69 26.92
Bra027436.1-P Field mustard nucleus 25.38 26.86
Bra037999.1-P Field mustard nucleus 22.94 25.86
Bra002823.1-P Field mustard nucleus 27.22 25.28
Bra019109.1-P Field mustard nucleus 24.77 25.16
Bra030136.1-P Field mustard cytosol 18.35 24.79
Bra026444.1-P Field mustard nucleus 27.22 23.99
Bra011215.1-P Field mustard cytosol 16.82 23.71
Bra037800.1-P Field mustard cytosol 21.71 23.51
Bra005020.1-P Field mustard nucleus, plastid 24.46 23.46
Bra000143.1-P Field mustard nucleus 25.69 22.4
Bra006709.1-P Field mustard plastid 26.3 21.88
Bra002559.1-P Field mustard plastid 26.3 21.66
Bra028173.1-P Field mustard cytosol, mitochondrion, nucleus, plastid 21.41 21.54
Bra019382.1-P Field mustard cytosol, mitochondrion, nucleus, plastid 23.85 20.91
Bra020313.1-P Field mustard plastid 24.77 20.82
Bra014266.1-P Field mustard nucleus 23.24 17.23
Bra005970.1-P Field mustard cytosol 14.98 16.9
Bra028935.1-P Field mustard nucleus 29.05 16.73
Bra008671.1-P Field mustard nucleus 12.23 13.94
Bra009323.1-P Field mustard cytosol 15.6 13.46
Bra023539.1-P Field mustard cytoskeleton, cytosol, nucleus 15.29 12.59
Bra021467.1-P Field mustard nucleus 14.68 12.31
Bra013006.1-P Field mustard nucleus 15.6 12.23
Protein Annotations
EnsemblPlants:Bra035835.1EnsemblPlants:Bra035835.1-PEnsemblPlantsGene:Bra035835Gene3D:3.30.40.10InterPro:IPR001841InterPro:IPR013083
InterPro:Znf_RINGInterPro:Znf_RING/FYVE/PHDPANTHER:PTHR44679PANTHER:PTHR44679:SF1PFAM:PF13639PFAM:PF14369
PFscan:PS50089SEG:segSMART:SM00184SUPFAM:SSF57850UniParc:UPI0002547CBFUniProt:M4F435
MapMan:35.1:::::
Description
AT3G19950 (E=1e-111) | zinc finger (C3HC4-type RING finger) family protein
Coordinates
chrA05:-:17481454..17482437
Molecular Weight (calculated)
34436.7 Da
IEP (calculated)
4.294
GRAVY (calculated)
-0.471
Length
327 amino acids
Sequence
(BLAST)
001: MSSGGNSAAS TAPAVEKMFF CYQCNHTVNI SISSAADPFC PLCSGGFLEE YDEPVPTLPA NLNPAASDFF PMADPFSTLL PLLFGSSSAP PPSSANPSFF
101: GPRSAQNQPQ GGAFDPFSFL QNHLQHLQSS GTHVQFLIED HPLDPSNQAP GHLGDYFFGP GLEQLIQQLA ENDPNRYGTP PASKSAIEGL PTVKVSKDML
201: KSEMNQCAVC MDEFEDGGDV KQVPCKHVFH QDCLMPWLEL HNSCPVCRYE LPTDDPDYES RSQGQGGQTS GDGGQTPRSF SVQLPWTFGG RRDGSGSGPP
301: GSGGGGAGGG AGGGGGSNLG TRQEDLD
Best Arabidopsis Sequence Match ( AT3G19950.2 )
(BLAST)
001: MGFSPKSVII VSELESATYD ITENYFSLSS DGSFLPSSSR FFCFVVSLSR SEKFAESVMS SGVNSTGSAA AAPEVDKMFF CYQCNQTVTI SISSSADPFC
101: PICNQGFLEE YEDPNPNQSL NFNPNSSDSF FPMADPFSTL LPLIFGSSAA APSGMDFMSL FGPSMQPQAR STQQNPQSDA FDPFTFLQNH LQTLRSSGTH
201: FEFVIENHPS DPGNRMPGNF GDYFFGPGLE QLIQQLAEND PNRYGTPPAS KSAIDALPTV KVTKDMLKSE MNQCAVCMDE FEDGSDVKQM PCKHVFHQDC
301: LLPWLELHNS CPVCRFELPT DDPDYENRSQ GSQGSGDGQG SVEGQQTPRF SIQLPWPFRR QDGSGSGSGA PGTGGGNLET RGEDLD
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQQ9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.