Factsheet for Bra014684.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75998	Canola	nucleus	100.0	100.0
Bra004589.1-P	Field mustard	nucleus	60.94	47.95
Bra007253.1-P	Field mustard	mitochondrion, nucleus	71.35	44.19
AT3G56580.1	Thale cress	mitochondrion	73.44	44.06
Bra000207.1-P	Field mustard	mitochondrion, nucleus	59.38	35.96
GSMUA_Achr8P09890_001	Banana	nucleus	39.58	32.9
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	43.75	32.43
GSMUA_AchrUn_...	Banana	nucleus	42.71	31.78
KRH33121	Soybean	nucleus	46.88	29.13
KRH71659	Soybean	nucleus	46.88	29.13
EER92269	Sorghum	nucleus	43.23	29.12
VIT_08s0040g00590.t01	Wine grape	nucleus	47.4	28.98
Os03t0351800-01	Rice	nucleus	42.71	28.98
Zm00001d047476_P001	Maize	mitochondrion	42.19	27.74
VIT_06s0009g02350.t01	Wine grape	mitochondrion	48.44	27.68
KRH14643	Soybean	nucleus	48.44	27.68
TraesCS3D01G432800.1	Wheat	mitochondrion	41.15	27.34
TraesCS3A01G440000.1	Wheat	mitochondrion	41.15	27.34
TraesCS3B01G474100.1	Wheat	mitochondrion	40.62	27.08
HORVU3Hr1G096110.1	Barley	mitochondrion	40.62	26.99
PGSC0003DMT400058464	Potato	nucleus	42.71	25.79
Solyc08g075910.1.1	Tomato	nucleus	40.1	25.58
KRH18631	Soybean	nucleus	40.62	25.49
Solyc01g009000.2.1	Tomato	plastid	42.19	25.47
PGSC0003DMT400079301	Potato	nucleus	39.58	25.33
Bra001767.1-P	Field mustard	nucleus	28.12	25.23
KRH18634	Soybean	nucleus	29.17	23.73
KRH73496	Soybean	mitochondrion	42.71	22.1
GSMUA_Achr11P...	Banana	mitochondrion	32.29	20.74
Bra019109.1-P	Field mustard	nucleus	30.21	18.01
Bra038246.1-P	Field mustard	nucleus	29.69	17.54
Bra002823.1-P	Field mustard	nucleus	31.77	17.33
Bra030136.1-P	Field mustard	cytosol	21.35	16.94
Bra028173.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	28.12	16.62
Bra035835.1-P	Field mustard	nucleus	27.6	16.21
Bra030854.1-P	Field mustard	nucleus	26.04	16.03
Bra037109.1-P	Field mustard	nucleus	27.08	15.57
Bra005020.1-P	Field mustard	nucleus, plastid	27.6	15.54
Bra037999.1-P	Field mustard	nucleus	22.92	15.17
Bra026444.1-P	Field mustard	nucleus	29.17	15.09
Bra000143.1-P	Field mustard	nucleus	28.65	14.67
Bra011215.1-P	Field mustard	cytosol	17.19	14.22
Bra027436.1-P	Field mustard	nucleus	22.4	13.92
Bra037800.1-P	Field mustard	cytosol	21.88	13.91
Bra002559.1-P	Field mustard	plastid	28.12	13.6
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	26.04	13.4
Bra020313.1-P	Field mustard	plastid	27.08	13.37
Bra005970.1-P	Field mustard	cytosol	19.79	13.1
Bra006709.1-P	Field mustard	plastid	26.56	12.98
Bra008671.1-P	Field mustard	nucleus	17.71	11.85
Bra009323.1-P	Field mustard	cytosol	22.4	11.35
Bra021467.1-P	Field mustard	nucleus	22.92	11.28
Bra014266.1-P	Field mustard	nucleus	25.52	11.11
Bra023539.1-P	Field mustard	cytoskeleton, cytosol, nucleus	21.88	10.58
Bra028935.1-P	Field mustard	nucleus	31.25	10.56
Bra013006.1-P	Field mustard	nucleus	21.88	10.07

Protein Annotations

EnsemblPlants:Bra014684.1	EnsemblPlants:Bra014684.1-P	EnsemblPlantsGene:Bra014684	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44290	PANTHER:PTHR44290:SF1	PFAM:PF13639	PFscan:PS50089
SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0002544783	UniProt:M4DDW5	MapMan:35.1

Description

AT3G56580 (E=3e-060) | zinc finger (C3HC4-type RING finger) family protein

Coordinates

chrA04:-:2219015..2220733

Molecular Weight (calculated)

22280.0 Da

IEP (calculated)

9.613

GRAVY (calculated)

-1.060

Length

192 amino acids

Sequence
(BLAST)

001: MESFNEVRIH MCKARNFNYY YLQTPLGFPP RRGTSHHRGP PPAAKSSIDA LPTVKIIQKH LKSSDSHCPV CKEEFELKSE AKQMPCKHVY HSDCIVPWLV
101: QHNTCPVCRK ELPSRGSSLS AQSEQNRSTN RRRNLFSSVW PFRSSSSSST QNRRETNNTA NTEEGQYTRY QHHHQHQQQQ ANMGYSGWPF DY

Best Arabidopsis Sequence Match ( AT3G56580.2 )
(BLAST)

001: MSSIRNTHWC HRCQRAVWLR ARDAVCSYCG GGFVEEIDIG PSRAHRDVER DPTFDLMEAF SAFMRSRLAE RSYDREISGR LGSAGSESFS NLAPLLIFGG
101: QAPFRLAGGD NSSVEAFVNG AAPGIGIARG TNAGDYFFGP GLEELIEQLS SGTHHRGPPP APKSSIDALP TIKITQKHLK SSDSHCPVCK DEFELKSEAK
201: QMPCHHIYHS DCIVPWLVQH NSCPVCRKEL PSRGSSSSTQ SSQNRSTNGR ENSRRRNIFS NLWPFRSSSS SSTQNRRDTN NTATAEEGHY HHHQQQQQQH
301: QHQHQQQQSH MGYSGWPFDY

Arabidopsis Description

RZF1E3 ubiquitin-protein ligase RZF1 [Source:UniProtKB/Swiss-Prot;Acc:Q94AK4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.