Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER92269 | Sorghum | nucleus | 66.23 | 53.68 |
| Os03t0351800-01 | Rice | nucleus | 64.07 | 52.3 |
| Zm00001d047476_P001 | Maize | mitochondrion | 64.5 | 51.03 |
| TraesCS3D01G432800.1 | Wheat | mitochondrion | 63.64 | 50.87 |
| TraesCS3B01G474100.1 | Wheat | mitochondrion | 63.2 | 50.69 |
| TraesCS3A01G440000.1 | Wheat | mitochondrion | 63.2 | 50.52 |
| HORVU3Hr1G096110.1 | Barley | mitochondrion | 62.34 | 49.83 |
| GSMUA_Achr11P... | Banana | mitochondrion | 59.31 | 45.82 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 50.65 | 45.17 |
| GSMUA_AchrUn_... | Banana | nucleus | 48.48 | 43.41 |
| VIT_08s0040g00590.t01 | Wine grape | nucleus | 56.71 | 41.72 |
| CDX75998 | Canola | nucleus | 32.9 | 39.58 |
| Bra014684.1-P | Field mustard | nucleus | 32.9 | 39.58 |
| KRH71659 | Soybean | nucleus | 52.81 | 39.48 |
| KRH33121 | Soybean | nucleus | 51.52 | 38.51 |
| KRH18634 | Soybean | nucleus | 38.1 | 37.29 |
| PGSC0003DMT400058464 | Potato | nucleus | 51.08 | 37.11 |
| KRH18631 | Soybean | nucleus | 48.92 | 36.93 |
| KRH14643 | Soybean | nucleus | 53.25 | 36.61 |
| Solyc01g009000.2.1 | Tomato | plastid | 49.78 | 36.16 |
| Bra004589.1-P | Field mustard | nucleus | 38.1 | 36.07 |
| VIT_06s0009g02350.t01 | Wine grape | mitochondrion | 52.38 | 36.01 |
| CDY23878 | Canola | mitochondrion, nucleus | 46.32 | 35.08 |
| CDY27204 | Canola | mitochondrion, nucleus | 47.19 | 34.94 |
| Bra007253.1-P | Field mustard | mitochondrion, nucleus | 46.32 | 34.52 |
| AT3G56580.1 | Thale cress | mitochondrion | 47.62 | 34.38 |
| CDY22483 | Canola | mitochondrion | 45.02 | 34.32 |
| CDX72127 | Canola | mitochondrion | 46.75 | 34.18 |
| GSMUA_Achr7P13060_001 | Banana | mitochondrion | 36.36 | 34.15 |
| Bra000207.1-P | Field mustard | mitochondrion, nucleus | 45.89 | 33.44 |
| CDY35437 | Canola | mitochondrion, nucleus | 45.89 | 33.44 |
| AT2G40830.4 | Thale cress | mitochondrion | 47.19 | 33.23 |
| KRH73496 | Soybean | mitochondrion | 52.81 | 32.88 |
| PGSC0003DMT400079301 | Potato | nucleus | 42.42 | 32.67 |
| Solyc08g075910.1.1 | Tomato | nucleus | 41.99 | 32.23 |
| CDX79968 | Canola | mitochondrion, nucleus | 41.13 | 31.99 |
| CDX94901 | Canola | cytosol | 39.83 | 29.3 |
| GSMUA_Achr9P05060_001 | Banana | nucleus | 23.38 | 29.03 |
| GSMUA_Achr5P19380_001 | Banana | plastid | 23.81 | 28.8 |
| GSMUA_Achr11P... | Banana | nucleus | 31.6 | 27.04 |
| GSMUA_Achr7P15040_001 | Banana | mitochondrion | 35.93 | 26.27 |
| GSMUA_Achr10P... | Banana | nucleus | 31.17 | 25.53 |
| GSMUA_Achr5P07070_001 | Banana | nucleus | 35.93 | 25.23 |
| GSMUA_Achr5P07680_001 | Banana | nucleus | 32.03 | 24.83 |
| GSMUA_Achr10P... | Banana | mitochondrion | 35.93 | 24.63 |
| GSMUA_Achr6P08590_001 | Banana | nucleus | 30.3 | 23.89 |
| GSMUA_AchrUn_... | Banana | mitochondrion, plastid | 35.93 | 23.65 |
| GSMUA_Achr10P... | Banana | nucleus | 30.3 | 23.1 |
| GSMUA_Achr6P23590_001 | Banana | mitochondrion, nucleus | 33.77 | 22.67 |
| GSMUA_Achr2P19140_001 | Banana | mitochondrion | 35.06 | 22.38 |
| GSMUA_Achr7P18340_001 | Banana | nucleus | 29.0 | 22.33 |
| GSMUA_Achr2P03780_001 | Banana | cytosol | 32.03 | 21.08 |
| GSMUA_Achr10P... | Banana | mitochondrion | 35.93 | 20.65 |
| GSMUA_Achr4P02460_001 | Banana | nucleus | 21.64 | 12.08 |
| GSMUA_Achr8P24510_001 | Banana | cytosol | 18.18 | 10.61 |
| GSMUA_Achr11P... | Banana | cytosol | 25.54 | 8.14 |
| GSMUA_Achr3P06300_001 | Banana | cytosol | 17.75 | 7.85 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P09890_001 | EnsemblPlants:GSMUA_Achr8T09890_001 | EnsemblPlantsGene:GSMUA_Achr8G09890_001 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR44290 | PANTHER:PTHR44290:SF1 | PFAM:PF13639 | PFAM:PF14369 |
| PFscan:PS50089 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0002952312 | UniProt:M0TP42 |
| MapMan:35.1 | : | : | : | : | : |
Description
zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G09890_001]
Coordinates
chr8:+:7018543..7023910
Molecular Weight (calculated)
26328.9 Da
IEP (calculated)
8.006
GRAVY (calculated)
-0.825
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNNRSTHWC YQCRQRVRPR ERDMLCPNCD SGFVMELDEM EDTMSHFGRT GRRPHVLLDG HHGVGVRRTG TADYFVGPGL DELIEQLMQN NRHGPPPASQ
101: SSINAMPTIK INQRHLHGDS HCPVCKERFE IGSEAREMPC KHFYHSECII PWLEQHNSCP VCRCEMPTQG SGSCSSSRSS NQSPGSSLRN SGRSRRSLWS
201: YLWPFRSSSS NSSSNWDFSH NNMLACDLNL R
101: SSINAMPTIK INQRHLHGDS HCPVCKERFE IGSEAREMPC KHFYHSECII PWLEQHNSCP VCRCEMPTQG SGSCSSSRSS NQSPGSSLRN SGRSRRSLWS
201: YLWPFRSSSS NSSSNWDFSH NNMLACDLNL R
001: MSSIRNTHWC HRCQRAVWLR ARDAVCSYCG GGFVEEIDIG PSRAHRDVER DPTFDLMEAF SAFMRSRLAE RSYDREISGR LGSAGSESFS NLAPLLIFGG
101: QAPFRLAGGD NSSVEAFVNG AAPGIGIARG TNAGDYFFGP GLEELIEQLS SGTHHRGPPP APKSSIDALP TIKITQKHLK SSDSHCPVCK DEFELKSEAK
201: QMPCHHIYHS DCIVPWLVQH NSCPVCRKEL PSRGSSSSTQ SSQNRSTNGR ENSRRRNIFS NLWPFRSSSS SSTQNRRDTN NTATAEEGHY HHHQQQQQQH
301: QHQHQQQQSH MGYSGWPFDY
101: QAPFRLAGGD NSSVEAFVNG AAPGIGIARG TNAGDYFFGP GLEELIEQLS SGTHHRGPPP APKSSIDALP TIKITQKHLK SSDSHCPVCK DEFELKSEAK
201: QMPCHHIYHS DCIVPWLVQH NSCPVCRKEL PSRGSSSSTQ SSQNRSTNGR ENSRRRNIFS NLWPFRSSSS SSTQNRRDTN NTATAEEGHY HHHQQQQQQH
301: QHQHQQQQSH MGYSGWPFDY
Arabidopsis Description
RZF1E3 ubiquitin-protein ligase RZF1 [Source:UniProtKB/Swiss-Prot;Acc:Q94AK4]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.