Factsheet for GSMUA_Achr5P07070_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P15040_001	Banana	mitochondrion	65.96	68.67
GSMUA_Achr10P...	Banana	mitochondrion	67.17	65.58
GSMUA_Achr2P19140_001	Banana	mitochondrion	64.74	58.84
GSMUA_Achr10P...	Banana	mitochondrion	71.43	58.46
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	57.75	54.13
Solyc06g005650.2.1	Tomato	extracellular	32.52	53.5
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	55.32	52.91
Os03t0271600-01	Rice	plastid	43.77	51.61
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	60.18	51.3
TraesCS4B01G209100.1	Wheat	plastid	43.16	50.71
TraesCS4A01G095800.1	Wheat	cytosol	43.16	50.71
TraesCS4D01G209500.1	Wheat	plastid	43.16	50.71
EER95109	Sorghum	plastid	41.95	50.18
Zm00001d047824_P001	Maize	plastid	42.25	50.0
Zm00001d028590_P001	Maize	plastid	42.25	50.0
KRG97885	Soybean	mitochondrion	51.98	47.9
KRH24759	Soybean	nucleus	51.37	46.81
KRH10229	Soybean	nucleus	44.38	46.5
KRH29763	Soybean	nucleus	50.76	46.26
KRH23103	Soybean	nucleus	44.07	46.18
PGSC0003DMT400005512	Potato	mitochondrion	54.1	46.11
KRH30994	Soybean	nucleus	54.71	45.8
PGSC0003DMT400016233	Potato	nucleus	53.8	44.92
GSMUA_Achr10P...	Banana	nucleus	38.3	44.68
Solyc04g011610.1.1	Tomato	nucleus	53.5	44.56
CDY20473	Canola	nucleus, plastid	43.47	42.81
Bra005020.1-P	Field mustard	nucleus, plastid	43.16	41.64
CDX74839	Canola	cytosol, plastid	40.43	41.05
HORVU4Hr1G060130.1	Barley	cytosol	42.86	40.06
CDX80258	Canola	plastid	42.86	39.72
Bra000143.1-P	Field mustard	nucleus	44.98	39.47
CDY07641	Canola	nucleus	44.68	39.3
CDY53450	Canola	cytosol	38.3	39.13
CDY61251	Canola	cytosol	42.86	39.06
CDY24951	Canola	nucleus	44.38	38.93
Bra020313.1-P	Field mustard	plastid	45.9	38.82
AT2G39720.2	Thale cress	nucleus	46.81	38.4
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	43.47	38.34
KRH15082	Soybean	nucleus	44.38	38.22
Bra006709.1-P	Field mustard	plastid	44.98	37.66
CDX88709	Canola	cytosol, plastid	44.98	37.56
Bra002559.1-P	Field mustard	plastid	44.98	37.28
CDX99105	Canola	cytosol, plastid	36.47	37.04
CDY48679	Canola	cytosol, plastid	37.39	36.83
AT3G46620.1	Thale cress	cytosol, plastid	44.07	36.71
KRH73053	Soybean	nucleus	43.47	36.57
GSMUA_Achr8P09890_001	Banana	nucleus	25.23	35.93
CDY33046	Canola	plastid	37.08	35.67
GSMUA_AchrUn_...	Banana	nucleus	25.84	32.95
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion, nucleus, plastid	25.84	32.82
GSMUA_Achr5P19380_001	Banana	plastid	17.63	30.37
AT5G59550.2	Thale cress	nucleus, plastid	46.2	29.69
GSMUA_Achr9P05060_001	Banana	nucleus	16.72	29.57
GSMUA_Achr7P13060_001	Banana	mitochondrion	20.97	28.05
GSMUA_Achr11P...	Banana	nucleus	22.19	27.04
GSMUA_Achr6P08590_001	Banana	nucleus	23.4	26.28
GSMUA_Achr11P...	Banana	mitochondrion	23.1	25.42
GSMUA_Achr2P03780_001	Banana	cytosol	26.14	24.5
GSMUA_Achr7P18340_001	Banana	nucleus	22.19	24.33
GSMUA_Achr5P07680_001	Banana	nucleus	21.28	23.49
GSMUA_Achr10P...	Banana	nucleus	21.58	23.43
GSMUA_Achr4P02460_001	Banana	nucleus	19.15	15.22
GSMUA_Achr8P24510_001	Banana	cytosol	17.02	14.14
GSMUA_Achr3P06300_001	Banana	cytosol	17.63	11.11
GSMUA_Achr11P...	Banana	cytosol	23.1	10.48

Protein Annotations

EnsemblPlants:GSMUA_Achr5P07070_001	EnsemblPlants:GSMUA_Achr5T07070_001	EnsemblPlantsGene:GSMUA_Achr5G07070_001	Gene3D:3.30.40.10	InterPro:DUF1117	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44274	PFAM:PF06547	PFAM:PF13639
PFAM:PF14369	PFscan:PS50089	SEG:seg	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000294F227
UniProt:M0SWD6	MapMan:35.1	:	:	:	:

Description

zinc finger, RING-type, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G07070_001]

Coordinates

chr5:+:5122571..5124043

Molecular Weight (calculated)

36148.2 Da

IEP (calculated)

7.146

GRAVY (calculated)

-0.502

Length

329 amino acids

Sequence
(BLAST)

001: MATASSYWCY RCSRFVRVWP QDAIVCPDCD GGFLEEVEIP PTRLSPANES RRRRRIPSDG AAHALASAGD RSPFNPVIVL RGPSDGPRDA DRAATTSSFE
101: LFYDDGTGSG LRPLPESISD FLMGSGFDRL LEQLAQIEIN GIGRGMGSAH SPASKAAIES MPTIEIVDDH IGRDCHCAVC MDPFELGTEA REMPCKHIYH
201: QDCILPWLSR RNTCPVCRHE VPTDARGRAV AGDEQAAREF PAVYTEMDGE FSNNGAPRRI SWTSRGSEGG GIGRAIRNFF SFFRLSRSTS SSSSFSSRPS
301: SESQPSFSRR HEGGSVFRWR SRSRGNAIA

Best Arabidopsis Sequence Match ( AT2G39720.1 )
(BLAST)

001: MASGSYWCYS CSRFVWVSDS ISCPDCDGGF LELIQEPLDF TPSDSFTTTT TTQHRSPTRF PPPSSSSSTP SASMHADNSP TPTIVTRTRS NRSPNPVIVL
101: RGSAAAPSSD VVSEGLDRSA FQMYYDDGTD SGLRPLPPSM TEFLLGSGFD RLLDQISQIE LNTNRNLRSC EHPPASKSAI EALPLIEIDP THLLSDSQSH
201: CAVCKENFVL KSSAREMPCN HIYHPDCILP WLAIRNSCPV CRHELPAEDL TDGTGAALTA VTATAEEEED SAAGLTIWRL PGGGFAVGRI PGGWRGGDRM
301: MPVVYTEVDG GRLGDERLPR RVAWGSRRGG RDGGGSRERG GGFAGRIMRL FGCFSGSSGS IAAAAAASSG SGSRIRVTRR TRSFSMFSTA SSSSRRRNWL
401: A

Arabidopsis Description

RHC2AProbable E3 ubiquitin-protein ligase RHC2A [Source:UniProtKB/Swiss-Prot;Acc:O22283]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.