CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d047824_P001	Maize	plastid	98.91	97.84
Zm00001d028590_P001	Maize	plastid	98.91	97.84
TraesCS4D01G209500.1	Wheat	plastid	93.09	91.43
TraesCS4B01G209100.1	Wheat	plastid	93.09	91.43
Os03t0271600-01	Rice	plastid	92.73	91.4
TraesCS4A01G095800.1	Wheat	cytosol	92.73	91.07
HORVU4Hr1G060130.1	Barley	cytosol	92.36	72.16
GSMUA_Achr7P15040_001	Banana	mitochondrion	56.0	48.73
KRH23103	Soybean	nucleus	53.45	46.82
KRH10229	Soybean	nucleus	53.09	46.5
GSMUA_Achr10P...	Banana	mitochondrion	55.27	45.1
CDY20473	Canola	nucleus, plastid	53.45	44.01
Bra005020.1-P	Field mustard	nucleus, plastid	53.09	42.82
KRH29763	Soybean	nucleus	56.0	42.66
KRG97885	Soybean	mitochondrion	54.91	42.3
CDX74839	Canola	cytosol, plastid	49.82	42.28
GSMUA_Achr5P07070_001	Banana	nucleus	50.18	41.95
KRH24759	Soybean	nucleus	54.55	41.55
CDY53450	Canola	cytosol	48.36	41.3
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	57.82	41.19
KRH30994	Soybean	nucleus	58.55	40.97
Bra000143.1-P	Field mustard	nucleus	55.27	40.53
EES17560	Sorghum	plastid	60.73	40.44
CDY07641	Canola	nucleus	54.91	40.37
GSMUA_Achr2P19140_001	Banana	mitochondrion	53.09	40.33
CDY24951	Canola	nucleus	54.55	40.0
CDY61251	Canola	cytosol	52.0	39.61
Solyc06g005650.2.1	Tomato	extracellular	28.73	39.5
CDX80258	Canola	plastid	50.91	39.44
PGSC0003DMT400005512	Potato	mitochondrion	55.27	39.38
GSMUA_Achr10P...	Banana	mitochondrion	56.73	38.81
PGSC0003DMT400016233	Potato	nucleus	55.27	38.58
Solyc04g011610.1.1	Tomato	nucleus	55.27	38.48
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	52.0	38.34
Bra020313.1-P	Field mustard	plastid	53.09	37.53
CDY48679	Canola	cytosol, plastid	45.09	37.13
CDX99105	Canola	cytosol, plastid	43.64	37.04
Bra006709.1-P	Field mustard	plastid	52.73	36.9
CDX88709	Canola	cytosol, plastid	52.73	36.8
Bra002559.1-P	Field mustard	plastid	53.09	36.78
AT3G46620.1	Thale cress	cytosol, plastid	52.73	36.71
AT2G39720.2	Thale cress	nucleus	52.73	36.16
CDY33046	Canola	plastid	44.73	35.96
KRH15082	Soybean	nucleus	48.36	34.82
KRH73053	Soybean	nucleus	48.0	33.76
AT5G59550.2	Thale cress	nucleus, plastid	53.45	28.71
EER92269	Sorghum	nucleus	26.91	25.96
KXG33564	Sorghum	mitochondrion	25.82	23.51
EER89027	Sorghum	nucleus	26.91	23.05
EER89401	Sorghum	mitochondrion, nucleus	27.27	22.46
KXG39475	Sorghum	cytosol	23.64	20.25
EES14331	Sorghum	plastid	20.73	19.45
EER90075	Sorghum	nucleus	21.09	19.14
KXG31176	Sorghum	plastid	24.73	19.1
OQU85475	Sorghum	cytosol	21.82	18.75
EES00577	Sorghum	nucleus	24.0	18.38
KXG37275	Sorghum	nucleus	24.36	17.49
KXG22238	Sorghum	plastid	22.55	15.94
OQU84547	Sorghum	cytoskeleton, cytosol, nucleus	21.09	14.99

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:8081514	UniProt:C5WQ14	InterPro:DUF1117	EnsemblPlants:EER95109
ProteinID:EER95109	ProteinID:EER95109.1	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538
GO:GO:0042787	GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF06547
PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	PANTHER:PTHR44274	PANTHER:PTHR44274:SF1	SMART:SM00184
EnsemblPlantsGene:SORBI_3001G422900	SUPFAM:SSF57850	unigene:Sbi.4858	UniParc:UPI0001A83138	RefSeq:XP_002468111.1	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:70357086..70358668

Molecular Weight (calculated)

29212.6 Da

IEP (calculated)

6.955

GRAVY (calculated)

-0.271

Length

275 amino acids

Sequence
(BLAST)

001: MESSPVSYWC YSCSRFVRVS PSTVVCPECD GGFLEQFTQP PPRGGGGSGR RGTMNPVIVL RGGSLSGFEL YYDDGAGEGL RPLPGDVQHL LMGSGFHRLL
101: DQFSRLEAAA PRPPASKAAV ESMPSVTVAG GGAHCAVCQE AFEPGAAGRE MPCKHVYHQD CILPWLSLRN SCPVCRQELP AAATPDAEAD AGLTIWRLPR
201: GGFAVGRFAG GPREQLPVVY TELDGGFSNG VGPRRVTWPE GEGQVDGGEG RIRRLLRNLF GCFGQPASSS QSRSG

Best Arabidopsis Sequence Match ( AT5G59550.2 )
(BLAST)

001: MDPTNSRHGA SFEFSTRRFT LSTFGQNAPS LYVTTVYNSA IIYPVKHSPR VYLPSNPTPL IPLLRIALKT TFSFSHLQTS LSLLWSAILL SSSSQILSPS
101: KKILKMPSTP TTPTTTTPIT ASYWCYSCTR FVSVWADQGT TTVGSVACPH CDGGFIEQIN DSSSAATELT IPASTEVRSI NNNRRSVIRR RRSGRRPSFN
201: PVIVLQGGAG EREEGEEGDA ARDRRAFEFY YDDGSGSGLR PLPDSVSEIL MGSGFERLLE QLSQIEASAT GIGRSGNPPA SKSAIESLPR VEISDCHIGS
301: EANCAVCTEI FETETEAREM PCKHLFHDDC IVPWLSIRNS CPVCRFELPS EPNRRSNNNE EDNAVGMTIW RLPGGGFAVG RFNAAMRDGE RVLPVVLTEM
401: DGGGIGNSQD GPRRISWVRS HGTLESDSNG TGSGSGSGGR LRRMVRGMVS LMRRVRPNRS SSSSSAAIST SSDNLDLNIE VESRVLDRSN SVMRRYFRRN
501: RSNRDSSSSV LH

Arabidopsis Description

zinc finger (C3HC4-type RING finger) family protein [Source:TAIR;Acc:AT5G59550]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.