Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY61251 | Canola | cytosol | 79.24 | 86.7 |
| Bra019382.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 80.25 | 84.99 |
| CDX99105 | Canola | cytosol, plastid | 66.84 | 81.48 |
| AT5G59550.2 | Thale cress | nucleus, plastid | 70.63 | 54.49 |
| EER95109 | Sorghum | plastid | 36.71 | 52.73 |
| Os03t0271600-01 | Rice | plastid | 37.22 | 52.69 |
| GSMUA_Achr7P15040_001 | Banana | mitochondrion | 41.77 | 52.22 |
| Zm00001d047824_P001 | Maize | plastid | 36.46 | 51.8 |
| Zm00001d028590_P001 | Maize | plastid | 36.46 | 51.8 |
| TraesCS4A01G095800.1 | Wheat | cytosol | 36.71 | 51.79 |
| TraesCS4B01G209100.1 | Wheat | plastid | 36.71 | 51.79 |
| TraesCS4D01G209500.1 | Wheat | plastid | 36.71 | 51.79 |
| KRH23103 | Soybean | nucleus | 40.76 | 51.27 |
| KRH10229 | Soybean | nucleus | 40.51 | 50.96 |
| GSMUA_Achr10P... | Banana | mitochondrion | 41.77 | 48.96 |
| VIT_06s0004g05090.t01 | Wine grape | mitochondrion, nucleus | 47.09 | 48.19 |
| GSMUA_AchrUn_... | Banana | mitochondrion, plastid | 42.78 | 48.15 |
| KRH29763 | Soybean | nucleus | 42.53 | 46.54 |
| Solyc06g005650.2.1 | Tomato | extracellular | 23.54 | 46.5 |
| KRH24759 | Soybean | nucleus | 42.28 | 46.26 |
| GSMUA_Achr6P23590_001 | Banana | mitochondrion, nucleus | 40.25 | 46.22 |
| GSMUA_Achr2P19140_001 | Banana | mitochondrion | 41.27 | 45.03 |
| PGSC0003DMT400005512 | Potato | mitochondrion | 43.8 | 44.82 |
| GSMUA_Achr5P07070_001 | Banana | nucleus | 36.71 | 44.07 |
| Os05t0110000-01 | Rice | mitochondrion | 36.2 | 42.94 |
| TraesCS3D01G532300.1 | Wheat | cytosol | 41.52 | 42.49 |
| Zm00001d035677_P001 | Maize | plastid | 36.96 | 41.95 |
| TraesCS3B01G595200.1 | Wheat | cytosol | 42.28 | 41.85 |
| HORVU4Hr1G060130.1 | Barley | cytosol | 36.96 | 41.48 |
| HORVU7Hr1G055010.1 | Barley | cytosol | 23.04 | 41.18 |
| TraesCS1A01G029800.1 | Wheat | cytosol | 40.76 | 40.35 |
| TraesCS1B01G036900.1 | Wheat | cytosol | 40.51 | 40.1 |
| TraesCS1D01G030300.1 | Wheat | nucleus | 40.76 | 40.05 |
| GSMUA_Achr10P... | Banana | mitochondrion | 40.76 | 40.05 |
| HORVU1Hr1G004330.14 | Barley | cytosol | 40.51 | 39.9 |
| EES17560 | Sorghum | plastid | 41.01 | 39.23 |
| Zm00001d011076_P001 | Maize | plastid | 37.72 | 38.5 |
| HORVU3Hr1G041030.1 | Barley | mitochondrion | 37.22 | 37.98 |
| GSMUA_Achr10P... | Banana | nucleus | 27.09 | 37.94 |
| AT2G39720.2 | Thale cress | nucleus | 38.48 | 37.91 |
| Os01t0972000-01 | Rice | nucleus | 30.63 | 36.23 |
| HORVU3Hr1G115000.7 | Barley | mitochondrion | 34.43 | 34.69 |
| AT2G40830.4 | Thale cress | mitochondrion | 22.03 | 26.52 |
| AT3G56580.1 | Thale cress | mitochondrion | 21.01 | 25.94 |
| AT3G13430.2 | Thale cress | nucleus | 19.75 | 24.76 |
| AT5G64920.1 | Thale cress | cytosol | 20.25 | 23.95 |
| AT1G60360.1 | Thale cress | nucleus | 19.75 | 23.85 |
| AT5G56340.1 | Thale cress | nucleus | 22.53 | 22.47 |
| AT3G19950.2 | Thale cress | cytosol | 21.77 | 22.28 |
| AT1G55530.2 | Thale cress | nucleus | 19.24 | 21.65 |
| AT4G26400.1 | Thale cress | nucleus | 19.24 | 21.35 |
| AT5G60820.1 | Thale cress | cytosol | 17.97 | 16.95 |
| AT5G01980.1 | Thale cress | nucleus | 20.25 | 16.23 |
| AT5G08139.1 | Thale cress | cytosol | 14.43 | 15.16 |
| AT5G15820.1 | Thale cress | cytosol | 11.9 | 13.51 |
| AT3G02340.2 | Thale cress | cytosol | 13.92 | 13.45 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:823815 | ProteinID:AEE78184.1 | ArrayExpress:AT3G46620 | EnsemblPlantsGene:AT3G46620 |
| RefSeq:AT3G46620 | TAIR:AT3G46620 | RefSeq:AT3G46620-TAIR-G | EnsemblPlants:AT3G46620.1 | TAIR:AT3G46620.1 | EMBL:AY093203 |
| EMBL:BT008859 | ProteinID:CAB62332.1 | InterPro:DUF1117 | GO:GO:0000209 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006464 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009414 | GO:GO:0009628 | GO:GO:0009719 |
| GO:GO:0009737 | GO:GO:0009738 | GO:GO:0009987 | GO:GO:0010200 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0019538 | GO:GO:0042787 | GO:GO:0043161 | GO:GO:0046872 | GO:GO:0051865 | GO:GO:0061630 |
| InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_190246.1 | PFAM:PF06547 | PFAM:PF13639 | PFAM:PF14369 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50089 | PANTHER:PTHR44274 |
| PANTHER:PTHR44274:SF3 | UniProt:Q9SNB6 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00000A33C9 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
RDUF1E3 ubiquitin-protein ligase RDUF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNB6]
Coordinates
chr3:-:17178601..17180559
Molecular Weight (calculated)
43153.6 Da
IEP (calculated)
6.407
GRAVY (calculated)
-0.504
Length
395 amino acids
Sequence
(BLAST)
(BLAST)
001: MMPNSRSATI TPTTESTTTT TTTTTTLTTS YWCYSCTRFI SVWEDQDANA GVLCPYCNGG FIEEIEDSSN STVAAIPAST PEVRSVEETH RSIIRRRRSN
101: RRTSFNPVIV LHGGGGGGAG ERVENEEGDG ATRERRAYEF YYDDGSGSGL RPLPDSVSEI LMGSGFERLL EQLSQIEASG NGIGRSGNPP ASKSAIESLP
201: RVEISDCHTK AEANCAVCTE VFEAGIEGRE MPCKHIFHGD CIVPWLSIRN SCPVCRFELP SDPIQRSNEE EHAVGMTIWR LPGGGFAVGR FNAGVREGER
301: ILPVVLTEMD GGGLGSNEGP RRISWVRAHE TPEMSRNGGR SGNGGRLRRA VRGMVSFMRR VRPSRGSSNS NVIDLDSDGE TRVMNRSTSL IRRFF
101: RRTSFNPVIV LHGGGGGGAG ERVENEEGDG ATRERRAYEF YYDDGSGSGL RPLPDSVSEI LMGSGFERLL EQLSQIEASG NGIGRSGNPP ASKSAIESLP
201: RVEISDCHTK AEANCAVCTE VFEAGIEGRE MPCKHIFHGD CIVPWLSIRN SCPVCRFELP SDPIQRSNEE EHAVGMTIWR LPGGGFAVGR FNAGVREGER
301: ILPVVLTEMD GGGLGSNEGP RRISWVRAHE TPEMSRNGGR SGNGGRLRRA VRGMVSFMRR VRPSRGSSNS NVIDLDSDGE TRVMNRSTSL IRRFF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.