Factsheet for Zm00001d035677_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	mitochondrion
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011076_P001	Maize	plastid	80.17	72.09
EES17560	Sorghum	plastid	84.77	71.43
Os05t0110000-01	Rice	mitochondrion	67.24	70.27
TraesCS1A01G029800.1	Wheat	cytosol	73.28	63.91
TraesCS1B01G036900.1	Wheat	cytosol	72.99	63.66
TraesCS1D01G030300.1	Wheat	nucleus	73.28	63.43
HORVU1Hr1G004330.14	Barley	cytosol	72.41	62.84
Zm00001d028590_P001	Maize	plastid	45.69	57.19
Zm00001d047824_P001	Maize	plastid	45.4	56.83
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	54.02	53.56
GSMUA_Achr6P23590_001	Banana	mitochondrion, nucleus	49.43	50.0
VIT_06s0004g05090.t01	Wine grape	mitochondrion, nucleus	55.17	49.74
Os01t0972000-01	Rice	nucleus	47.13	49.1
KRH23103	Soybean	nucleus	43.97	48.73
KRH10229	Soybean	nucleus	43.39	48.09
CDY20473	Canola	nucleus, plastid	45.11	47.01
KRH29763	Soybean	nucleus	48.56	46.81
KRH24759	Soybean	nucleus	48.28	46.54
KRG97885	Soybean	mitochondrion	47.7	46.5
PGSC0003DMT400005512	Potato	mitochondrion	51.44	46.37
Bra005020.1-P	Field mustard	nucleus, plastid	44.54	45.45
Solyc04g011610.1.1	Tomato	nucleus	51.44	45.32
PGSC0003DMT400016233	Potato	nucleus	51.15	45.18
Solyc06g005650.2.1	Tomato	extracellular	25.86	45.0
KRH30994	Soybean	nucleus	50.57	44.78
CDX74839	Canola	cytosol, plastid	41.67	44.75
CDY07641	Canola	nucleus	45.69	42.51
Bra000143.1-P	Field mustard	nucleus	45.69	42.4
CDX80258	Canola	plastid	42.82	41.97
CDY24951	Canola	nucleus	45.11	41.87
CDY53450	Canola	cytosol	38.22	41.3
CDY61251	Canola	cytosol	41.67	40.17
Bra020313.1-P	Field mustard	plastid	44.83	40.1
AT2G39720.2	Thale cress	nucleus	45.98	39.9
CDX99105	Canola	cytosol, plastid	37.07	39.81
Bra019382.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	42.53	39.68
CDY48679	Canola	cytosol, plastid	37.93	39.52
Bra006709.1-P	Field mustard	plastid	44.25	39.19
CDX88709	Canola	cytosol, plastid	44.25	39.09
KRH15082	Soybean	nucleus	42.82	39.01
Bra002559.1-P	Field mustard	plastid	44.25	38.79
CDY33046	Canola	plastid	37.93	38.6
KRH73053	Soybean	nucleus	42.82	38.11
AT3G46620.1	Thale cress	cytosol, plastid	41.95	36.96
AT5G59550.2	Thale cress	nucleus, plastid	43.97	29.88
Zm00001d045625_P001	Maize	cytosol	25.29	28.39
Zm00001d047476_P001	Maize	mitochondrion	22.41	26.71
Zm00001d032646_P001	Maize	cytosol	27.59	25.6
Zm00001d052154_P001	Maize	mitochondrion	23.28	25.47
Zm00001d013971_P001	Maize	cytosol, mitochondrion, plastid, vacuole	27.01	24.42
Zm00001d037167_P001	Maize	cytosol, mitochondrion, nucleus, plastid	23.85	24.41
Zm00001d047560_P001	Maize	cytosol	21.55	24.27
Zm00001d043183_P001	Maize	plastid	22.41	24.0
Zm00001d018190_P001	Maize	mitochondrion	22.7	23.72
Zm00001d038528_P001	Maize	cytosol	22.13	23.12
Zm00001d040445_P001	Maize	nucleus	22.99	23.12
Zm00001d008237_P001	Maize	nucleus	22.41	22.35
Zm00001d010635_P001	Maize	nucleus	18.97	21.15
Zm00001d012564_P001	Maize	mitochondrion	20.98	21.1
Zm00001d051736_P001	Maize	cytosol	19.83	20.91
Zm00001d031273_P001	Maize	cytosol, plastid	17.24	20.76
Zm00001d046663_P001	Maize	cytosol	17.24	20.13
Zm00001d013005_P002	Maize	nucleus	19.54	18.33
Zm00001d053704_P001	Maize	cytosol	17.53	17.13

Protein Annotations

EnsemblPlants:Zm00001d035677_P001	EnsemblPlants:Zm00001d035677_T001	EnsemblPlantsGene:Zm00001d035677	EntrezGene:107546767	Gene3D:3.30.40.10	InterPro:DUF1117
InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR44274	PFAM:PF06547
PFAM:PF13639	PFAM:PF14369	PFscan:PS50089	ProteinID:AQK79428.1	SEG:seg	SMART:SM00184
SUPFAM:SSF57850	UniParc:UPI0002221709	UniProt:A0A1D6LHS9	MapMan:35.1	:	:

Description

Putative RING zinc finger domain superfamily protein

Coordinates

chr6:-:40570676..40571722

Molecular Weight (calculated)

37153.8 Da

IEP (calculated)

8.074

GRAVY (calculated)

-0.277

Length

348 amino acids

Sequence
(BLAST)

001: MAMPSSPSPT RLPTASSSYW CYQCDRFVRA ASPLSSPACP SCGGGFLEEM SAPPPRPAYL RRPRAHHAAD SRAASPFNPV IVLRRSPPAA ASFELLYDDG
101: AGSGLRPLPE TMSDFLMGSG FQRLLDQLAQ IEAAGGLAAG ARDAPPPASK AAVQAMPVVS VAAADAHCAV CKEAFHLGAE AREMPCAHIY HADCILPWLA
201: LRNSCPVCRH QMPTDAIPLE QEEEATVGLT IWRLPGGGFA VGRFAGGRTP EERELPVVYT EMDGAGFNSG RAPRRVSWGS RQAASTNRGT VRRFLRNVFA
301: CFGRGHASSS SRSHAVPELN NDAFSHGSRS RSTSWRLEDG HADATVQS

Best Arabidopsis Sequence Match ( AT3G46620.1 )
(BLAST)

001: MMPNSRSATI TPTTESTTTT TTTTTTLTTS YWCYSCTRFI SVWEDQDANA GVLCPYCNGG FIEEIEDSSN STVAAIPAST PEVRSVEETH RSIIRRRRSN
101: RRTSFNPVIV LHGGGGGGAG ERVENEEGDG ATRERRAYEF YYDDGSGSGL RPLPDSVSEI LMGSGFERLL EQLSQIEASG NGIGRSGNPP ASKSAIESLP
201: RVEISDCHTK AEANCAVCTE VFEAGIEGRE MPCKHIFHGD CIVPWLSIRN SCPVCRFELP SDPIQRSNEE EHAVGMTIWR LPGGGFAVGR FNAGVREGER
301: ILPVVLTEMD GGGLGSNEGP RRISWVRAHE TPEMSRNGGR SGNGGRLRRA VRGMVSFMRR VRPSRGSSNS NVIDLDSDGE TRVMNRSTSL IRRFF

Arabidopsis Description

RDUF1E3 ubiquitin-protein ligase RDUF1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNB6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.