Factsheet for Zm00001d051736_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d033980_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G08139.1	Zm00001d033980_P001	AT4G14640.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU85475	Sorghum	cytosol	87.27	90.0
TraesCS6B01G318600.1	Wheat	cytosol, plastid	60.3	64.82
Os02t0727700-01	Rice	cytosol, nucleus, plastid	60.61	64.31
TraesCS6A01G288800.1	Wheat	cytosol, plastid	58.48	62.87
HORVU6Hr1G072430.1	Barley	cytosol	59.7	54.12
Zm00001d031273_P001	Maize	cytosol, plastid	21.82	24.91
Zm00001d046663_P001	Maize	cytosol	21.21	23.49
Zm00001d028590_P001	Maize	plastid	18.79	22.3
Solyc02g089410.2.1	Tomato	nucleus	21.82	22.02
Zm00001d047824_P001	Maize	plastid	18.48	21.94
GSMUA_Achr8P24510_001	Banana	cytosol	25.76	21.46
Zm00001d045625_P001	Maize	cytosol	19.7	20.97
CDY69134	Canola	cytosol	18.18	20.62
KRH56750	Soybean	cytosol	21.21	20.47
PGSC0003DMT400003515	Potato	nucleus	22.73	20.22
CDX78323	Canola	cytosol	17.58	20.14
Bra005970.1-P	Field mustard	cytosol	17.58	20.0
Zm00001d035677_P001	Maize	plastid	20.91	19.83
KRH18313	Soybean	nucleus	22.42	19.79
Zm00001d047476_P001	Maize	mitochondrion	17.27	19.52
KRH03189	Soybean	nucleus	20.91	19.44
Zm00001d047560_P001	Maize	cytosol	18.18	19.42
Solyc02g065650.1.1	Tomato	cytosol, nucleus, plastid	23.33	19.4
Zm00001d010635_P001	Maize	nucleus	18.18	19.23
PGSC0003DMT400063293	Potato	nucleus	24.85	18.98
KRG93748	Soybean	nucleus, plastid	21.82	18.95
PGSC0003DMT400068309	Potato	cytosol	22.42	18.59
Zm00001d032646_P001	Maize	cytosol	20.91	18.4
VIT_17s0000g04730.t01	Wine grape	nucleus	24.24	18.22
Zm00001d013971_P001	Maize	cytosol, mitochondrion, plastid, vacuole	21.21	18.18
CDX69973	Canola	cytosol	19.7	18.06
Zm00001d038528_P001	Maize	cytosol	18.18	18.02
Zm00001d037167_P001	Maize	cytosol, mitochondrion, nucleus, plastid	18.48	17.94
Zm00001d040445_P001	Maize	nucleus	18.79	17.92
VIT_14s0083g00710.t01	Wine grape	nucleus	21.21	17.9
AT5G08139.1	Thale cress	cytosol	20.3	17.82
Zm00001d008237_P001	Maize	nucleus	18.79	17.77
Zm00001d011076_P001	Maize	plastid	20.61	17.57
CDY34722	Canola	cytosol	20.61	17.44
CDY21513	Canola	cytosol	18.79	17.42
CDX69496	Canola	cytosol	15.15	17.36
CDY34721	Canola	cytosol	20.3	17.18
Bra021467.1-P	Field mustard	nucleus	20.3	17.18
Bra009323.1-P	Field mustard	cytosol	19.7	17.15
Zm00001d053704_P001	Maize	cytosol	18.48	17.13
GSMUA_Achr3P06300_001	Banana	cytosol	26.97	17.05
Bra008671.1-P	Field mustard	nucleus	14.55	16.72
Solyc03g114680.2.1	Tomato	nucleus	25.15	16.67
CDX85531	Canola	cytosol	17.27	16.62
Zm00001d043183_P001	Maize	plastid	16.36	16.62
CDY26465	Canola	cytosol	16.97	16.52
AT3G02340.2	Thale cress	cytosol	20.3	16.38
AT5G15820.1	Thale cress	cytosol	17.27	16.38
CDX90972	Canola	cytosol	16.36	16.12
CDY02194	Canola	peroxisome	19.39	16.08
Zm00001d013005_P002	Maize	nucleus	17.88	15.9
CDY51628	Canola	peroxisome	19.39	15.76
Zm00001d052154_P001	Maize	mitochondrion	15.15	15.72
Zm00001d012564_P001	Maize	mitochondrion	16.06	15.32
Zm00001d018190_P001	Maize	mitochondrion	15.45	15.32
Bra013006.1-P	Field mustard	nucleus	19.09	15.11
Bra023539.1-P	Field mustard	cytoskeleton, cytosol, nucleus	17.58	14.61
AT5G60820.1	Thale cress	cytosol	18.18	14.32

Protein Annotations

EntrezGene:100217052	Gene3D:3.30.40.10	MapMan:35.1	ProteinID:AQK55044.1	UniProt:B4FL43	EMBL:BT037831
GO:GO:0003674	GO:GO:0005488	GO:GO:0008270	GO:GO:0046872	InterPro:IPR001841	InterPro:IPR011016
InterPro:IPR013083	PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR44679	SMART:SM00184	SMART:SM00744
SUPFAM:SSF57850	UniParc:UPI00017B6A78	EnsemblPlantsGene:Zm00001d051736	EnsemblPlants:Zm00001d051736_P001	EnsemblPlants:Zm00001d051736_T001	InterPro:Znf_RING
InterPro:Znf_RING-CH	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RING/U-box superfamily protein

Coordinates

chr4:+:168565296..168566288

Molecular Weight (calculated)

35643.3 Da

IEP (calculated)

3.852

GRAVY (calculated)

-0.456

Length

330 amino acids

Sequence
(BLAST)

001: MANDSLAHHL LLPLAGGCWS DVEEEEEEEE ASNVSFPSFW PPFPALSPDP DSDADSFVRP RMDRPRETAA SSFFGLGFHD GEDDEWAPAD EDGELGLPLC
101: WDCLQLEDHD DDDHRRWDVG VSDADEWEQV AGREEEAAAA AAAPAVRSLQ WEVLLAANSL GSLVVDDGDD DLDSGIETYF LDDADDLLFG QLAAADADHE
201: PPPGKCGRPA AKAAVEALPT VVVLEADAQC AVCKDGVEAG EERARRLPCA HLYHDGCILP WLAIRNTCPL CRHELPTDDT EYERWKARRA AGDGGDAADA
301: DADRLGTAAG TVSSSGYLDE WIGERSNGLV

Best Arabidopsis Sequence Match ( AT5G15820.1 )
(BLAST)

001: MSSAKLFGCS INVNVEAEEE EGGDGGSSTN VEVSRSGNQP DCEAMSFSNQ MEIGVRNTYY QFLESNSDSG SDSMYAEPEF IDFFDRESYE VDTVREVCVS
101: SNQRVSTPGY FNIWDQDVDL GLGIGLGSRS GSGQLPGDSG GVGVEVGRGV TPVEYNLFGE EAMVVDEVLE WENFNNAIHL VQEPAYASME GEEEEEEDEV
201: VMEFAASIYS DAWEILLYDN MTNSAPMDLD VEVWLDSVDG YAPMDYNAII GQMFDNETGI KGTPPASKSV VDGLPDVELT IEELSSVSIV CAICKDEVVF
301: KEKVKRLPCK HYYHGECIIP WLGIRNTCPV CRHELPTDDL EYERKRRA

Arabidopsis Description

AT5g15820/F14F8_200 [Source:UniProtKB/TrEMBL;Acc:Q9LFU4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.