Factsheet for Solyc02g065650.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068309	Potato	cytosol	92.7	92.46
Solyc02g089410.2.1	Tomato	nucleus	40.81	49.54
VIT_14s0083g00710.t01	Wine grape	nucleus	40.81	41.43
Os06t0633500-01	Rice	cytosol, nucleus	12.34	39.52
KRG93748	Soybean	nucleus, plastid	37.53	39.21
KRH18313	Soybean	nucleus	36.78	39.04
GSMUA_Achr8P24510_001	Banana	cytosol	32.24	32.32
AT3G02340.2	Thale cress	cytosol	28.46	27.63
CDY34722	Canola	cytosol	25.94	26.41
Bra021467.1-P	Field mustard	nucleus	25.69	26.15
CDY34721	Canola	cytosol	25.69	26.15
GSMUA_Achr3P06300_001	Banana	cytosol	33.0	25.1
Bra008671.1-P	Field mustard	nucleus	18.14	25.09
AT5G15820.1	Thale cress	cytosol	21.91	25.0
CDX69496	Canola	cytosol	17.88	24.65
TraesCS6A01G288800.1	Wheat	cytosol, plastid	18.89	24.43
Os02t0727700-01	Rice	cytosol, nucleus, plastid	18.89	24.12
TraesCS6B01G318600.1	Wheat	cytosol, plastid	18.64	24.1
OQU85475	Sorghum	cytosol	19.4	24.06
CDX85531	Canola	cytosol	20.4	23.62
CDY26465	Canola	cytosol	20.15	23.6
Zm00001d051736_P001	Maize	cytosol	19.4	23.33
CDX90972	Canola	cytosol	19.65	23.28
Solyc03g114680.2.1	Tomato	nucleus	28.97	23.09
Bra023539.1-P	Field mustard	cytoskeleton, cytosol, nucleus	22.92	22.92
Os08t0487500-01	Rice	plastid	15.11	22.14
TraesCS7B01G144100.1	Wheat	plastid	14.36	21.19
TraesCS7D01G246300.1	Wheat	plastid	14.11	20.82
TraesCS7A01G247700.1	Wheat	cytosol, plastid	13.85	20.45
HORVU6Hr1G072430.1	Barley	cytosol	18.64	20.33
Zm00001d046663_P001	Maize	cytosol	14.86	19.8
Solyc09g074460.1.1	Tomato	nucleus	18.64	19.63
Zm00001d031273_P001	Maize	cytosol, plastid	14.11	19.38
EER90075	Sorghum	nucleus	14.11	18.48
EES14331	Sorghum	plastid	13.6	18.43
Zm00001d053704_P001	Maize	cytosol	15.87	17.7
Os02t0191500-01	Rice	nucleus	16.62	17.6
OQU84547	Sorghum	cytoskeleton, cytosol, nucleus	17.13	17.57
TraesCS7A01G391700.1	Wheat	cytosol	14.11	16.92
TraesCS7D01G387300.1	Wheat	cytosol	13.85	16.87
TraesCS7B01G293600.1	Wheat	cytosol	13.85	16.67
Solyc01g104260.2.1	Tomato	mitochondrion	12.59	16.67
Solyc04g009170.1.1	Tomato	nucleus	12.85	16.5
HORVU6Hr1G034800.1	Barley	cytosol, nucleus	15.11	16.22
TraesCS6D01G160300.1	Wheat	nucleus	13.85	15.8
Solyc08g075910.1.1	Tomato	nucleus	11.59	15.28
HORVU7Hr1G092570.1	Barley	cytosol	14.61	15.14
Solyc06g005650.2.1	Tomato	extracellular	7.3	14.5
Solyc01g009000.2.1	Tomato	plastid	11.59	14.47
Solyc01g050040.2.1	Tomato	nucleus	10.58	14.38
TraesCS6B01G198800.1	Wheat	nucleus	14.36	14.21
Solyc04g011610.1.1	Tomato	nucleus	14.11	14.18
Solyc03g098590.2.1	Tomato	cytosol	13.1	14.09
Solyc11g012950.1.1	Tomato	cytosol	9.57	11.41

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0000209	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016740	GO:GO:0019538
GO:GO:0042787	GO:GO:0043161	GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	UniProt:K4B6Z7
PFAM:PF13639	PFscan:PS50089	PANTHER:PTHR44679	SMART:SM00184	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc02g065650.1
EnsemblPlants:Solyc02g065650.1.1	UniParc:UPI0002768DEA	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

No Description!

Coordinates

chr2:-:36806907..36808100

Molecular Weight (calculated)

44155.9 Da

IEP (calculated)

3.809

GRAVY (calculated)

-0.530

Length

397 amino acids

Sequence
(BLAST)

001: MAEVSGIYRF HLPSTIYATV VDDDDEEYPH PFTFDFDSLS PPNHTLFIHS HDFNYSPNSE PEPGSLDSDS GSDHSGLLAD PDSFVVDDDQ MNFVTDLFVT
101: PDGNVSEDSG FDDGNRVILE DVYGDFGSDY DGVLLPSDTN GVDTGDGIRV VGVVGSDSDS QEVELNVGEI DQANDFWSCL RIDDQRDVND EFEWEEVNER
201: GEDRDYLSSV IDGIEEISVS SDISSSEGGN SNSHSVDEPV RNLEWEVLLA VNNIERSLEL DGNDDGIAHV NETDHDALFG QFLESEGNLK GSPPAAKSVI
301: ENLPLVTLKD EENKIACAVC KDEILVVEKV TELPCSHYYH WECIIPWLNI RNTCPVCRHE LPTDDTDYER RKIGRRPGAG AQLSSDFQVR YNFEIVP

Best Arabidopsis Sequence Match ( AT3G02340.2 )
(BLAST)

001: MASTKPDSAI NLEEEAEGDG VAVDDPIFIP ETTNLLVRYS PFDDRDIDCN PYFPFTGPIS DSGSGSYSDS EPDPNSCPID FFDRDSSDVD VAEYLESGGL
101: TAGDYNIWGF YDPKEDEEEE EIVLGTSGSD LQPGDSGEQG LRVTGIDSDS DCEDGVFDFI SEDSSGNRGN DSGRVEVGTG LPPVWDHLFG EGTVLADEEW
201: EEVQNAINWT AFSGPEDEDE EDELSSLSRD DEEEDHELDW QVLLTVNNVV NYIEQAEGIM LNPDDIDPDY YLYLSGLDEF DENHSGHYDA DAILGQMFDD
301: ETGIRGNPPA AKSVIQDLPV VELAVEELDK GNNVCAVCKD EMLVEEKVRR LPCSHFYHGE CIIPWLGIRN TCPVCRYELP TDDLEYERHK SSERGDTGLA
401: RNVLPGRYS

Arabidopsis Description

At3g02340 [Source:UniProtKB/TrEMBL;Acc:Q9FWA5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.